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transposon_annotation_reasonate
|
public |
Transposon Annotator "reasonaTE" - part of TransposonUltimate
|
2025-03-25 |
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transposon_annotation_tools_proteinncbicdd1000
|
public |
NCBI CDD 1000 Protein Selection for Transposons, tool developed by Kevin Riehl (2021)
|
2025-03-25 |
|
transposon_classifier_rfsb
|
public |
Transposon Classifier "RFSB" - part of TransposonUltimate
|
2025-03-25 |
|
transposition_detector_detect
|
public |
Transposition Event Detector "deTEct" - part of TransposonUltimate
|
2025-03-25 |
|
seqkit
|
public |
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation
|
2025-03-25 |
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transposon_annotation_tools_transposonpsicli
|
public |
TransposonPSIv1.0, tool developed by Brian Haas (2010), http://transposonpsi.sourceforge.net/
|
2025-03-25 |
|
transposon_annotation_tools_sinescan
|
public |
SINE_scanv1.1.1, tool developed by Mao & Wang (2017) Bioinformatics, https://doi.org/10.1093/bioinformatics/btw718, https://github.com/maohlzj/SINE_Scan
|
2025-03-25 |
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transposon_annotation_tools_mitefinderii
|
public |
MiteFinderIIv1.0, tool developed by Jialu et al. (2018) BMC Medical Genomics, https://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-018-0418-y, https://github.com/jhu99/miteFinder
|
2025-03-25 |
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transposon_annotation_tools_mitetracker
|
public |
MiteTrackerv1.0, tool developed by Zavallo et al. (2018) BMC bioinformatics, https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2376-y, https://github.com/INTABiotechMJ/MITE-Tracker
|
2025-03-25 |
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transposon_annotation_tools_mustv2
|
public |
MUSTv2, tool developed by Ge et al. (2017) Journal of integrative bioinformatics, https://doi.org/10.1515/jib-2017-0029, http://www.healthinformaticslab.org/supp/resources.php
|
2025-03-25 |
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transposon_annotation_tools_helitronscanner
|
public |
HelitronScannerv1.0, tool developed by Xiong et al. (2014) Proceedings of the National Academy of Sciences, https://doi.org/10.1073/pnas.1410068111, https://sourceforge.net/projects/helitronscanner/files/
|
2025-03-25 |
|
transposon_annotation_tools_sinefinder
|
public |
SineFinderv1.0.1, tool developed by Wenke et al. (2011) Plant Cell, https://doi.org/10.1105/tpc.111.088682
|
2025-03-25 |
