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r-collapsibletree
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public |
Interactive Reingold-Tilford tree diagrams created using 'D3.js', where every node can be expanded and collapsed by clicking on it. Tooltips and color gradients can be mapped to nodes using a numeric column in the source data frame. See 'collapsibleTree' website for more information and examples.
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2025-09-24 |
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r-vtree
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public |
A tool for calculating and drawing "variable trees". Variable trees display information about nested subsets of a data frame.
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2025-09-24 |
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r-webchem
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public |
Chemical information from around the web. This package interacts with a suite of web services for chemical information. Sources include: Alan Wood's Compendium of Pesticide Common Names, Chemical Identifier Resolver, ChEBI, Chemical Translation Service, ChemIDplus, ChemSpider, ETOX, Flavornet, NIST Chemistry WebBook, OPSIN, PAN Pesticide Database, PubChem, SRS, Wikidata.
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2025-09-24 |
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r-dot
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public |
Renders DOT diagram markup language in R and also provides the possibility to export the graphs in PostScript and SVG (Scalable Vector Graphics) formats. In addition, it supports literate programming packages such as 'knitr' and 'rmarkdown'.
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2025-09-24 |
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r-intrinsic
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Provides functions to estimate the intrinsic dimension of a dataset via likelihood-based approaches. Specifically, the package implements the 'TWO-NN' and 'Gride' estimators and the 'Hidalgo' Bayesian mixture model. In addition, the first reference contains an extended vignette on the usage of the 'TWO-NN' and 'Hidalgo' models. References: Denti (2022+, <arXiv:2102.11425>); Allegra et al. (2020, <doi:10.1038/s41598-020-72222-0>); Denti et al. (2022, <doi:10.1038/s41598-022-20991-1>); Facco et al. (2017, <doi:10.1038/s41598-017-11873-y>); Santos-Fernandez et al. (2021, <doi:10.1038/s41598-022-20991-1>).
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2025-09-24 |
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r-networkd3
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public |
Creates 'D3' 'JavaScript' network, tree, dendrogram, and Sankey graphs from 'R'.
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2025-09-24 |
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r-nimble
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public |
A system for writing hierarchical statistical models largely compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and do basic R-style math, and compiling both models and nimbleFunctions via custom- generated C++. 'NIMBLE' includes default methods for MCMC, particle filtering, Monte Carlo Expectation Maximization, and some other tools. The nimbleFunction system makes it easy to do things like implement new MCMC samplers from R, customize the assignment of samplers to different parts of a model from R, and compile the new samplers automatically via C++ alongside the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New distributions and functions can be added, including as calls to external compiled code. Although most people think of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing arbitrary other kinds of model-generic algorithms as well. A full User Manual is available at <https://r-nimble.org>.
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2025-09-24 |
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apsg
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public |
APSG - python package for structural geologists
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2025-09-24 |
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r-imbalance
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public |
Class imbalance usually damages the performance of classifiers. Thus, it is important to treat data before applying a classifier algorithm. This package includes recent resampling algorithms in the literature: (Barua et al. 2014) <doi:10.1109/tkde.2012.232>; (Das et al. 2015) <doi:10.1109/tkde.2014.2324567>, (Zhang et al. 2014) <doi:10.1016/j.inffus.2013.12.003>; (Gao et al. 2014) <doi:10.1016/j.neucom.2014.02.006>; (Almogahed et al. 2014) <doi:10.1007/s00500-014-1484-5>. It also includes an useful interface to perform oversampling.
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2025-09-24 |
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r-knitcitations
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public |
Provides the ability to create dynamic citations in which the bibliographic information is pulled from the web rather than having to be entered into a local database such as 'bibtex' ahead of time. The package is primarily aimed at authoring in the R 'markdown' format, and can provide outputs for web-based authoring such as linked text for inline citations. Cite using a 'DOI', URL, or 'bibtex' file key. See the package URL for details.
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2025-09-24 |
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r-soupx
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public |
Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.
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2025-09-24 |
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r-sccore
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public |
Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.
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2025-09-24 |
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r-fportfolio
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public |
A collection of functions to optimize portfolios and to analyze them from different points of view.
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2025-09-24 |
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pytsql
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public |
pytsql allows to run mssql scripts, typically run via GUIs, via CLI.
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2025-09-24 |
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r-drake
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public |
A general-purpose computational engine for data analysis, drake rebuilds intermediate data objects when their dependencies change, and it skips work when the results are already up to date. Not every execution starts from scratch, there is native support for parallel and distributed computing, and completed projects have tangible evidence that they are reproducible. Extensive documentation, from beginner-friendly tutorials to practical examples and more, is available at the reference website <https://ropensci.github.io/drake/> and the online manual <https://ropenscilabs.github.io/drake-manual/>.
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2025-09-24 |
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r-gwidgetstcltk
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public |
Port of the gWidgets API to the tcltk package.
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2025-09-24 |
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r-sparsebn
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public |
Fast methods for learning sparse Bayesian networks from high-dimensional data using sparse regularization, as described in Aragam, Gu, and Zhou (2017) <arXiv:1703.04025>. Designed to handle mixed experimental and observational data with thousands of variables with either continuous or discrete observations.
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2025-09-24 |
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r-spotifyr
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An R wrapper for pulling data from the 'Spotify' Web API <http://developer.spotify.com/web-api> in bulk. It allows you to enter an artist's name and retrieve their entire discography in seconds, along with audio features and lyrics from Genius Lyrics <https://www.genius.com>. You can also pull song and playlist information for a given 'Spotify' user.
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2025-09-24 |
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r-trackdown
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Collaborative writing and editing of R Markdown (or Sweave) documents. The local .Rmd (or .Rnw) is uploaded as a plain-text file to Google Drive. By taking advantage of the easily readable Markdown (or LaTeX) syntax and the well-known online interface offered by Google Docs, collaborators can easily contribute to the writing and editing process. After integrating all authors’ contributions, the final document can be downloaded and rendered locally.
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2025-09-24 |
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smi-analysis
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public |
Scientific Python for data analysis at the Soft Matter Interface (SMI) beamline at NSLS-II
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2025-09-24 |
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r-anocva
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public |
Provides ANOCVA (ANalysis Of Cluster VAriability), a non-parametric statistical test to compare clustering structures with applications in functional magnetic resonance imaging data (fMRI). The ANOCVA allows us to compare the clustering structure of multiple groups simultaneously and also to identify features that contribute to the differential clustering.
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2025-09-24 |
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psygnal
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public |
Pure python implementation of Qt Signals
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2025-09-24 |
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cryspy
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public |
PNPD data analysis
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2025-09-24 |
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r-fail
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public |
More comfortable interface to work with R data or source files in a key-value fashion.
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2025-09-24 |
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r-datacomparer
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public |
Easy comparison of two tabular data objects in R. Specifically designed to show differences between two sets of data in a useful way that should make it easier to understand the differences, and if necessary, help you work out how to remedy them. Aims to offer a more useful output than all.equal() when your two data sets do not match, but isn't intended to replace all.equal() as a way to test for equality.
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2025-09-24 |
