r-soupx

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Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.

Copied fromcf-post-staging / r-soupx

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Installation

To install this package, run one of the following:

Conda

$conda install conda-forge::r-soupx

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About

Summary

Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.

Last Updated

Nov 2, 2022 at 16:35

License

GPL-2.0-only

Total Downloads

49.8K

Version Downloads

11.3K

Supported Platforms

noarch

Home

https://github.com/constantAmateur/SoupX