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r-sqn
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public |
Normalization based a subset of negative control probes as described in 'Subset quantile normalization using negative control features'. Wu Z, Aryee MJ, J Comput Biol. 2010 Oct;17(10):1385-95 [PMID 20976876].
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2025-04-22 |
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r-startr
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public |
Tool to automatically fetch, transform and arrange subsets of multidimensional data sets (collections of files) stored in local and/or remote file systems or servers, using multicore capabilities where possible. The tool provides an interface to perceive a collection of data sets as a single large multidimensional data array, and enables the user to request for automatic retrieval, processing and arrangement of subsets of the large array. Wrapper functions to add support for custom file formats can be plugged in/out, making the tool suitable for any research field where large multidimensional data sets are involved.
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2025-04-22 |
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r-sel
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public |
This package implements a novel method for fitting a bounded probability distribution to quantiles (for example stated by an expert), see Bornkamp and Ickstadt (2009) for details. For this purpose B-splines are used, and the density is obtained by penalized least squares based on a Brier entropy penalty. The package provides methods for fitting the distribution as well as methods for evaluating the underlying density and cdf. In addition methods for plotting the distribution, drawing random numbers and calculating quantiles of the obtained distribution are provided.
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2025-04-22 |
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r-turboem
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public |
Algorithms for accelerating the convergence of slow, monotone sequences from smooth, contraction mapping such as the EM and MM algorithms. It can be used to accelerate any smooth, linearly convergent acceleration scheme. A tutorial style introduction to this package is available in a vignette on the CRAN download page or, when the package is loaded in an R session, with vignette("turboEM").
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2025-04-22 |
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r-smoothie
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public |
Functions to smooth two-dimensional fields using FFT and the convolution theorem
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2025-04-22 |
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r-biclust
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public |
The main function biclust() provides several algorithms to find biclusters in two-dimensional data: Cheng and Church (2000, ISBN:1-57735-115-0), spectral (2003) <doi:10.1101/gr.648603>, plaid model (2005) <doi:10.1016/j.csda.2004.02.003>, xmotifs (2003) <doi:10.1142/9789812776303_0008> and bimax (2006) <doi:10.1093/bioinformatics/btl060>. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.
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2025-04-22 |
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r-additivitytests
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public |
Implementation of the Tukey, Mandel, Johnson-Graybill, LBI, Tusell and modified Tukey non-additivity tests.
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2025-04-22 |
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metar
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public |
python-metar is a python package that parses coded METAR weather reports.
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2025-04-22 |
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r-celestial
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public |
Contains a number of common astronomy conversion routines, particularly the HMS and degrees schemes, which can be fiddly to convert between on mass due to the textural nature of the former. It allows users to coordinate match datasets quickly. It also contains functions for various cosmological calculations.
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2025-04-22 |
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r-umap
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public |
Uniform manifold approximation and projection is a technique for dimension reduction. The algorithm was described by McInnes and Healy (2018) in <arXiv:1802.03426>. This package provides an interface for two implementations. One is written from scratch, including components for nearest-neighbor search and for embedding. The second implementation is a wrapper for 'python' package 'umap-learn' (requires separate installation, see vignette for more details).
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2025-04-22 |
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r-rmariadb
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public |
Implements a 'DBI'-compliant interface to 'MariaDB' (<https://mariadb.org/>) and 'MySQL' (<https://www.mysql.com/>) databases.
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2025-04-22 |
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lightkurve
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public |
A friendly package for Kepler & TESS time series analysis in Python.
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2025-04-22 |
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oktopus
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public |
A soft-bodied, eight-armed package for beautiful inference.
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2025-04-22 |
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neurosynchro
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public |
Train and use neural networks to quickly approximate polarized synchrotron radiative transfer coefficients.
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2025-04-22 |
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ukpopulation
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public |
Download, cache, collate, filter and extrapolate UK Population estimates and projections
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2025-04-22 |
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flask_table
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public |
HTML tables for use with the Flask micro-framework
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2025-04-22 |
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sphinxcontrib-openapi
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public |
A Sphinx extension to generate APIs docs from OpenAPI (fka Swagger) spec.
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2025-04-22 |
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potranslator
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public |
A python package to easily translate po and pot files in any language supported by Google Translate.
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2025-04-22 |
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py2swagger
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public |
Python OpenAPI Specification generator
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2025-04-22 |
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pytest-picked
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public |
Run the tests related to the changed files
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2025-04-22 |
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r-dbplot
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public |
Leverages 'dplyr' to process the calculations of a plot inside a database. This package provides helper functions that abstract the work at three levels: outputs a 'ggplot', outputs the calculations, outputs the formula needed to calculate bins.
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2025-04-22 |
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sphinxcontrib-srclinks
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public |
Sphinx extension to add links to various views of the documentation page source
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2025-04-22 |
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ligo-gracedb
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public |
A Python package for accessing the GraceDB API
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2025-04-22 |
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trouve
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public |
A package to search for events in time-series data that match a boolean condition.
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2025-04-22 |
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modestpy
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public |
FMI-compliant Model Estimation in Python
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2025-04-22 |
