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r-rmsnumpress
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public |
'Rcpp' bindings to the native C++ implementation of MS Numpress, that provides two compression schemes for numeric data from mass spectrometers. The library provides implementations of 3 different algorithms, 1 designed to compress first order smooth data like retention time or M/Z arrays, and 2 for compressing non smooth data with lower requirements on precision like ion count arrays. Refer to the publication (Teleman et al., (2014) <doi:10.1074/mcp.O114.037879>) for more details.
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2025-09-24 |
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r-repo
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public |
A data manager meant to avoid manual storage/retrieval of data to/from the file system. It builds one (or more) centralized repository where R objects are stored with rich annotations, including corresponding code chunks, and easily searched and retrieved.
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2025-09-24 |
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r-diagrammer
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public |
Build graph/network structures using functions for stepwise addition and deletion of nodes and edges. Work with data available in tables for bulk addition of nodes, edges, and associated metadata. Use graph selections and traversals to apply changes to specific nodes or edges. A wide selection of graph algorithms allow for the analysis of graphs. Visualize the graphs and take advantage of any aesthetic properties assigned to nodes and edges.
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2025-09-24 |
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r-bio3d
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public |
Utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data. In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. Please refer to the URLs below for more information.
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2025-09-24 |
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r-extrafont
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public |
Tools to using fonts other than the standard PostScript fonts. This package makes it easy to use system TrueType fonts and with PDF or PostScript output files, and with bitmap output files in Windows. extrafont can also be used with fonts packaged specifically to be used with, such as the fontcm package, which has Computer Modern PostScript fonts with math symbols. See https://github.com/wch/extrafont for instructions and examples.
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2025-09-24 |
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hdlib
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public |
hdlib
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2025-09-24 |
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r-robust
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public |
Methods for robust statistics, a state of the art in the early 2000s, notably for robust regression and robust multivariate analysis.
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2025-09-24 |
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fractal-task-tools
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public |
Shared tools for Fractal tasks
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2025-09-24 |
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epics-base-static-libs
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public |
EPICS Base Library
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2025-09-24 |
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epics-base
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public |
EPICS Base Library
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2025-09-24 |
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libtirpc
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public |
Libtirpc is a Transport-Independent RPC library for Linux
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2025-09-24 |
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r-fedmatch
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public |
Provides a flexible set of tools for matching two un-linked data sets. 'fedmatch' allows for three ways to match data: exact matches, fuzzy matches, and multi-variable matches. It also allows an easy combination of these three matches via the tier matching function.
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2025-09-24 |
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r-puniform
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public |
Provides meta-analysis methods that correct for publication bias and outcome reporting bias. Four methods and a visual tool are currently included in the package. The p-uniform method as described in van Assen, van Aert, and Wicherts (2015) <https:psycnet.apa.org/record/2014-48759-001> can be used for estimating the average effect size, testing the null hypothesis of no effect, and testing for publication bias using only the statistically significant effect sizes of primary studies. The second method in the package is the p-uniform* method as described in van Aert and van Assen (2019) <doi:10.31222/osf.io/zqjr9>. This method is an extension of the p-uniform method that allows for estimation of the average effect size and the between-study variance in a meta-analysis, and uses both the statistically significant and nonsignificant effect sizes. The third method in the package is the hybrid method as described in van Aert and van Assen (2017) <doi:10.3758/s13428-017-0967-6>. The hybrid method is a meta-analysis method for combining an original study and replication and while taking into account statistical significance of the original study. The p-uniform and hybrid method are based on the statistical theory that the distribution of p-values is uniform conditional on the population effect size. The fourth method in the package is the Snapshot Bayesian Hybrid Meta-Analysis Method as described in van Aert and van Assen (2018) <doi:10.1371/journal.pone.0175302>. This method computes posterior probabilities for four true effect sizes (no, small, medium, and large) based on an original study and replication while taking into account publication bias in the original study. The method can also be used for computing the required sample size of the replication akin to power analysis in null hypothesis significance testing. The meta-plot is a visual tool for meta-analysis that provides information on the primary studies in the meta-analysis, the results of the meta-analysis, and characteristics of the research on the effect under study (van Assen et al., 2021). Helper functions to apply the Correcting for Outcome Reporting Bias (CORB) method to correct for outcome reporting bias in a meta-analysis (van Aert & Wicherts, 2021).
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2025-09-24 |
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r-constructive
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public |
Prints code that can be used to recreate R objects. In a sense it is similar to 'base::dput()' or 'base::deparse()' but 'constructive' strives to use idiomatic constructors.
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2025-09-24 |
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r-gdalraster
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public |
API bindings to the Geospatial Data Abstraction Library ('GDAL', <https://gdal.org>). Implements the 'GDAL' Raster and Vector Data Models. Bindings are implemented with 'Rcpp' modules. Exposed C++ classes and stand-alone functions wrap much of the 'GDAL' API and provide additional functionality. Calling signatures resemble the native C, C++ and Python APIs provided by the 'GDAL' project. Class 'GDALRaster' encapsulates a 'GDALDataset' and its raster band objects. Class 'GDALVector' encapsulates an 'OGRLayer' and the 'GDALDataset' that contains it. Initial bindings are provided to the unified 'gdal' command line interface added in 'GDAL' 3.11. C++ stand-alone functions provide bindings to most 'GDAL' "traditional" raster and vector utilities, including 'OGR' facilities for vector geoprocessing, several algorithms, as well as the Geometry API ('GEOS' via 'GDAL' headers), the Spatial Reference Systems API, and methods for coordinate transformation. Bindings to the Virtual Systems Interface ('VSI') API implement standard file system operations abstracted for URLs, cloud storage services, 'Zip'/'GZip'/'7z'/'RAR', in-memory files, as well as regular local file systems. This provides a single interface for operating on file system objects that works the same for any storage backend. A custom raster calculator evaluates a user-defined R expression on a layer or stack of layers, with pixel x/y available as variables in the expression. Raster 'combine()' identifies and counts unique pixel combinations across multiple input layers, with optional raster output of the pixel-level combination IDs. Basic plotting capability is provided for raster and vector display. 'gdalraster' leans toward minimalism and the use of simple, lightweight objects for holding raw data. Currently, only minimal S3 class interfaces have been implemented for selected R objects that contain spatial data. 'gdalraster' may be useful in applications that need scalable, low-level I/O, or prefer a direct 'GDAL' API.
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2025-09-24 |
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r-graphlayouts
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public |
Several new layout algorithms to visualize networks are provided which are not part of 'igraph'. Most are based on the concept of stress majorization by Gansner et al. (2004) <doi:10.1007/978-3-540-31843-9_25>. Some more specific algorithms allow to emphasize hidden group structures in networks or focus on specific nodes.
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2025-09-24 |
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r-boolnet
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public |
Provides methods to reconstruct and generate synchronous, asynchronous, probabilistic and temporal Boolean networks, and to analyze and visualize attractors in Boolean networks.
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2025-09-24 |
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r-rmr2
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public |
Supports the map reduce programming model on top of hadoop streaming
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2025-09-24 |
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r-admiral
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public |
A toolbox for programming Clinical Data Interchange Standards Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets in R. ADaM datasets are a mandatory part of any New Drug or Biologics License Application submitted to the United States Food and Drug Administration (FDA). Analysis derivations are implemented in accordance with the "Analysis Data Model Implementation Guide" (CDISC Analysis Data Model Team, 2021, <https://www.cdisc.org/standards/foundational/adam>).
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2025-09-24 |
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r-ggresidpanel
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public |
An R package for creating panels of diagnostic plots for residuals from a model using ggplot2 and plotly to analyze residuals and model assumptions from a variety of viewpoints. It also allows for the creation of interactive diagnostic plots.
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2025-09-24 |
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r-cols4all
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public |
Color palettes for all people, including those with color vision deficiency. Popular color palette series have been organized by type and have been scored on several properties such as color-blind-friendliness and fairness (i.e. do colors stand out equally?). Own palettes can also be loaded and analysed. Besides the common palette types (categorical, sequential, and diverging) it also includes cyclic and bivariate color palettes. Furthermore, a color for missing values is assigned to each palette.
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2025-09-24 |
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r-essentials
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public |
Some essential packages for working with R. This was migrated from the 'r' channel.
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2025-09-24 |
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r-catr
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public |
Provides routines for the generation of response patterns under unidimensional dichotomous and polytomous computerized adaptive testing (CAT) framework. It holds many standard functions to estimate ability, select the first item(s) to administer and optimally select the next item, as well as several stopping rules. Options to control for item exposure and content balancing are also available (Magis and Barrada (2017) <doi:10.18637/jss.v076.c01>).
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2025-09-24 |
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r-datasetjson
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public |
Read, construct and write CDISC (Clinical Data Interchange Standards Consortium) Dataset JSON (JavaScript Object Notation) files, while validating per the Dataset JSON schema file, as described in CDISC (2023) <https://www.cdisc.org/standards/data-exchange/dataset-json>.
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2025-09-24 |
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r-ggpointdensity
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public |
A cross between a 2D density plot and a scatter plot, implemented as a 'ggplot2' geom. Points in the scatter plot are colored by the number of neighboring points. This is useful to visualize the 2D-distribution of points in case of overplotting.
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2025-09-24 |
