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r-aricode
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public |
Implements an efficient O(n) algorithm based on bucket-sorting for fast computation of standard clustering comparison measures. Available measures include adjusted Rand index (ARI), normalized information distance (NID), normalized mutual information (NMI), adjusted mutual information (AMI), normalized variation information (NVI) and entropy, as described in Vinh et al (2009) <doi:10.1145/1553374.1553511>. Include AMI (Adjusted Mutual Information) since version 0.1.2, a modified version of ARI (MARI) and simple Chi-square distance since version 1.0.0.
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2025-09-23 |
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r-flexsurv
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public |
Flexible parametric models for time-to-event data, including the Royston-Parmar spline model, generalized gamma and generalized F distributions. Any user-defined parametric distribution can be fitted, given at least an R function defining the probability density or hazard. There are also tools for fitting and predicting from fully parametric multi-state models.
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2025-09-23 |
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r-dockerfiler
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public |
Build a Dockerfile straight from your R session. 'dockerfiler' allows you to create step by step a Dockerfile, and provide convenient tools to wrap R code inside this Dockerfile.
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2025-09-23 |
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r-sroc
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public |
This package contains a collection of functions to perform nonparametric estimation of receiver operating characteristic (ROC) curves for continuous data.
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2025-09-23 |
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r-w4mrutils
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Some utils tools for W4M
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2025-09-23 |
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r-lcars
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public |
Provides Shiny widgets and theme that support a 'Library Computer Access/Retrieval System' (LCARS) aesthetic for Shiny apps. The package also includes functions for adding a minimal LCARS theme to static 'ggplot2' graphs. More details about LCARS can be found at <https://en.wikipedia.org/wiki/LCARS>.
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2025-09-23 |
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r-bigstep
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public |
Selecting linear and generalized linear models for large data sets using modified stepwise procedure and modern selection criteria (like modifications of Bayesian Information Criterion). Selection can be performed on data which exceed RAM capacity.
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2025-09-23 |
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r-rpresto
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public |
Implements a 'DBI' compliant interface to Presto. Presto is an open source distributed SQL query engine for running interactive analytic queries against data sources of all sizes ranging from gigabytes to petabytes: <https://prestodb.io/>.
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2025-09-23 |
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r-nozzle.r1
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public |
The Nozzle package provides an API to generate HTML reports with dynamic user interface elements based on JavaScript and CSS (Cascading Style Sheets). Nozzle was designed to facilitate summarization and rapid browsing of complex results in data analysis pipelines where multiple analyses are performed frequently on big data sets. The package can be applied to any project where user-friendly reports need to be created.
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2025-09-23 |
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r-riskmetric
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public |
Facilities for assessing R packages against a number of metrics to help quantify their robustness.
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2025-09-23 |
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r-cansim
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public |
Searches for, accesses, and retrieves new-format and old-format Statistics Canada data tables, as well as individual vectors, as tidy data frames. This package deals with encoding issues, allows for bilingual English or French language data retrieval, and bundles convenience functions to make it easier to work with retrieved table data. Optional caching features are provided.
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2025-09-23 |
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dials-data
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public |
DIALS Regression Data Manager
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2025-09-23 |
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r-sheetreader
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public |
Uses C++ via the 'Rcpp' package to parse modern Excel files ('.xlsx'). Memory usage is kept minimal by decompressing only parts of the file at a time, while employing multiple threads to achieve significant runtime reduction. Uses <https://github.com/richgel999/miniz>, <https://github.com/ebiggers/libdeflate>, and <https://github.com/lemire/fast_double_parser>.
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2025-09-23 |
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r-fossil
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public |
A set of analytical tools useful in analysing ecological and geographical data sets, both ancient and modern. The package includes functions for estimating species richness (Chao 1 and 2, ACE, ICE, Jacknife), shared species/beta diversity, species area curves and geographic distances and areas.
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2025-09-23 |
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r-atsa
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public |
Contains some tools for testing, analyzing time series data and fitting popular time series models such as ARIMA, Moving Average and Holt Winters, etc. Most functions also provide nice and clear outputs like SAS does, such as identify, estimate and forecast, which are the same statements in PROC ARIMA in SAS.
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2025-09-23 |
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r-rdrop2
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public |
Provides full programmatic access to the 'Dropbox' file hosting platform <https://dropbox.com>, including support for all standard file operations.
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2025-09-23 |
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r-tensr
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public |
A collection of functions for Kronecker structured covariance estimation and testing under the array normal model. For estimation, maximum likelihood and Bayesian equivariant estimation procedures are implemented. For testing, a likelihood ratio testing procedure is available. This package also contains additional functions for manipulating and decomposing tensor data sets. This work was partially supported by NSF grant DMS-1505136. Details of the methods are described in Gerard and Hoff (2015) <doi:10.1016/j.jmva.2015.01.020> and Gerard and Hoff (2016) <doi:10.1016/j.laa.2016.04.033>.
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2025-09-23 |
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r-ptxqc
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public |
Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite. Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) 'doi:10.1021/acs.jproteome.5b00780'.
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2025-09-23 |
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r-uchardet
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R bindings of the 'uchardet', encoding detector library from Mozilla (<https://www.freedesktop.org/wiki/Software/uchardet/>). It takes a sequence of bytes in an unknown character encoding and without any additional information, and attempts to get the encoding of the text. All return names of the encodings are iconv-compatible.
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2025-09-23 |
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r-excelr
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public |
An R interface to 'jExcel' library to create web-based interactive tables and spreadsheets compatible with 'Excel' or any other spreadsheet software.
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2025-09-23 |
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r-tidync
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public |
Tidy tools for 'NetCDF' data sources. Explore the contents of a 'NetCDF' source (file or URL) presented as variables organized by grid with a database-like interface. The hyper_filter() interactive function translates the filter value or index expressions to array-slicing form. No data is read until explicitly requested, as a data frame or list of arrays via hyper_tibble() or hyper_array().
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2025-09-23 |
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r-rang
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Resolve the dependency graph of R packages at a specific time point based on the information from various 'R-hub' web services <https://blog.r-hub.io/>. The dependency graph can then be used to reconstruct the R computational environment with 'Rocker' <https://rocker-project.org>.
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2025-09-23 |
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r-radix
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public |
Scientific and technical article format for the web. 'Radix' articles feature attractive, reader-friendly typography, flexible layout options for visualizations, and full support for footnotes and citations.
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2025-09-23 |
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r-systemfit
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Econometric estimation of simultaneous systems of linear and nonlinear equations using Ordinary Least Squares (OLS), Weighted Least Squares (WLS), Seemingly Unrelated Regressions (SUR), Two-Stage Least Squares (2SLS), Weighted Two-Stage Least Squares (W2SLS), and Three-Stage Least Squares (3SLS) as suggested, e.g., by Zellner (1962) <doi:10.2307/2281644>, Zellner and Theil (1962) <doi:10.2307/1911287>, and Schmidt (1990) <doi:10.1016/0304-4076(90)90127-F>.
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2025-09-23 |
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r-coenocliner
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Simulate species occurrence and abundances (counts) along gradients.
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2025-09-23 |
