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r-ecospat
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public |
Collection of R functions and data sets for the support of spatial ecology analyses with a focus on pre, core and post modelling analyses of species distribution, niche quantification and community assembly. Written by current and former members and collaborators of the ecospat group of Antoine Guisan, Department of Ecology and Evolution (DEE) and Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Switzerland. Read Di Cola et al. (2016) <doi:10.1111/ecog.02671> for details.
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2025-09-26 |
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pandas-stubs
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public |
Collection of Pandas stub files
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2025-09-26 |
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boto3-stubs-lite-essential
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public |
Type annotations for boto3 1.40.40, generated with mypy-boto3-builder
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2025-09-26 |
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boto3-stubs-lite
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public |
Type annotations for boto3 1.40.40, generated with mypy-boto3-builder
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2025-09-26 |
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flang
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public |
Flang is a Fortran compiler targeting LLVM.
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2025-09-26 |
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mypy_boto3_ec2
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public |
Type annotations for boto3.EC2 1.40.40 service, generated by mypy-boto3-builder
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2025-09-26 |
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libsbml
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public |
Non-official conda package of libSBML with all available packages
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2025-09-26 |
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r-ravetools
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public |
Implemented fast and memory-efficient Notch-filter, Welch-periodogram, discrete
wavelet spectrogram for minutes of high-resolution signals, fast 3D convolution,
image registration, 3D mesh manipulation; providing fundamental toolbox for
intracranial Electroencephalography (iEEG) pipelines.
Documentation and examples about 'RAVE' project are provided at
<https://openwetware.org/wiki/RAVE>, and the paper by John F. Magnotti,
Zhengjia Wang, Michael S. Beauchamp (2020) <doi:10.1016/j.neuroimage.2020.117341>;
see 'citation("ravetools")' for details.
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2025-09-26 |
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pytorch-3dunet
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public |
Versatile U-Net implementation for volumetric semantic segmentation written in PyTorch
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2025-09-26 |
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r-greg
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public |
Methods for manipulating regression models and for describing these in a style adapted for medical journals. Contains functions for generating an HTML table with crude and adjusted estimates, plotting hazard ratio, plotting model estimates and confidence intervals using forest plots, extending this to comparing multiple models in a single forest plots. In addition to the descriptive methods, there are functions for the robust covariance matrix provided by the 'sandwich' package, a function for adding non-linearities to a model, and a wrapper around the 'Epi' package's Lexis() functions for time-splitting a dataset when modeling non-proportional hazards in Cox regressions.
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2025-09-26 |
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r-bshazard
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public |
The function estimates the hazard function non parametrically from a survival object (possibly adjusted for covariates). The smoothed estimate is based on B-splines from the perspective of generalized linear mixed models. Left truncated and right censoring data are allowed. The package is based on the work in Rebora P (2014) <doi:10.32614/RJ-2014-028>.
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2025-09-26 |
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perspective
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public |
Streaming pivot visualization via WebAssembly
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2025-09-26 |
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r-parcor
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public |
The package estimates the matrix of partial correlations based on different regularized regression methods: lasso, adaptive lasso, PLS, and Ridge Regression. In addition, the package provides model selection for lasso, adaptive lasso and Ridge regression based on cross-validation.
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2025-09-26 |
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r-bcrocsurface
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public |
The bias-corrected estimation methods for the receiver operating characteristics ROC surface and the volume under ROC surfaces (VUS) under missing at random (MAR) assumption.
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2025-09-26 |
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bioviz
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public |
Visualization toolkit for the biorbd suite
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2025-09-26 |
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r-analogue
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public |
Fits Modern Analogue Technique and Weighted Averaging transfer function models for prediction of environmental data from species data, and related methods used in palaeoecology.
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2025-09-26 |
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biorbd
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public |
Biomechanical add-ons to the RigidBody Dynamics Library
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2025-09-26 |
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girder-client
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public |
Python client for interacting with Girder servers
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2025-09-26 |
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opencosmo
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public |
The OpenCosmo Python Toolkit
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2025-09-26 |
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pynini
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public |
Finite-state grammar compilation
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2025-09-26 |
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r-visualizer
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public |
Plotting methods for climate4R data visualization. Includes the implementation of several seasonal climate verification plots (See: <https://doi.org/10.1016/j.envsoft.2017.09.008>).
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2025-09-26 |
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r-shazam
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public |
Provides a computational framework for analyzing mutations in immunoglobulin (Ig) sequences. Includes methods for Bayesian estimation of antigen-driven selection pressure, mutational load quantification, building of somatic hypermutation (SHM) models, and model-dependent distance calculations. Also includes empirically derived models of SHM for both mice and humans. Citations: Gupta and Vander Heiden, et al (2015) <doi:10.1093/bioinformatics/btv359>, Yaari, et al (2012) <doi:10.1093/nar/gks457>, Yaari, et al (2013) <doi:10.3389/fimmu.2013.00358>, Cui, et al (2016) <doi:10.4049/jimmunol.1502263>.
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2025-09-26 |
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r-binman
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public |
Tools and functions for managing the download of binary files. Binary repositories are defined in 'YAML' format. Defining new pre-download, download and post-download templates allow additional repositories to be added.
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2025-09-26 |
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r-kml
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public |
An implementation of k-means specifically design to cluster longitudinal data. It provides facilities to deal with missing value, compute several quality criterion (Calinski and Harabatz, Ray and Turie, Davies and Bouldin, BIC, ...) and propose a graphical interface for choosing the 'best' number of clusters.
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2025-09-26 |
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r-rcurl
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public |
A wrapper for 'libcurl' Provides functions to allow one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.
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2025-09-26 |
