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zizmor
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public |
Static analysis for GitHub Actions
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2025-09-26 |
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r-clustcurv
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public |
A method for determining groups in multiple curves with an automatic selection of their number based on k-means or k-medians algorithms. The selection of the optimal number is provided by bootstrap methods. The methodology can be applied both in regression and survival framework. Implemented methods are: Grouping multiple survival curves described by Villanueva et al. (2018) <doi:10.1002/sim.8016>.
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2025-09-26 |
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r-kml3d
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public |
An implementation of k-means specifically design to cluster joint trajectories (longitudinal data on several variable-trajectories). Like 'kml', it provides facilities to deal with missing value, compute several quality criterion (Calinski and Harabatz, Ray and Turie, Davies and Bouldin, BIC,...) and propose a graphical interface for choosing the 'best' number of clusters. In addition, the 3D graph representing the mean joint-trajectories of each cluster can be exported through LaTeX in a 3D dynamic rotating PDF graph.
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2025-09-26 |
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r-threebrain
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public |
A fast, interactive cross-platform, and easy to share
'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or
'AFNI/SUMA' surfaces. The viewer widget can be either standalone or
embedded into 'R-shiny' applications. The standalone version only require
a web browser with 'WebGL2' support (for example, 'Chrome', 'Firefox',
'Safari'), and can be inserted into any websites. The 'R-shiny'
support allows the 3D viewer to be dynamically generated from reactive user
inputs. Please check the publication by Wang, Magnotti, Zhang,
and Beauchamp (2023, <doi:10.1523/ENEURO.0328-23.2023>) for electrode
localization. This viewer has been fully adopted by 'RAVE'
<https://openwetware.org/wiki/RAVE>, an interactive toolbox to
analyze 'iEEG' data by Magnotti, Wang, and Beauchamp (2020,
<doi:10.1016/j.neuroimage.2020.117341>). Please check
'citation("threeBrain")' for details.
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2025-09-26 |
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botocore
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public |
Low-level, data-driven core of boto 3.
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2025-09-26 |
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r-tigger
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public |
Infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>. Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.
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2025-09-26 |
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codex
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public |
Lightweight coding agent that runs in your terminal
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2025-09-26 |
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ffmpeg
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public |
Cross-platform solution to record, convert and stream audio and video.
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2025-09-26 |
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s1_frame_enumerator
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public |
Enumerate interferogram pairs from ARIA spatially fixed frames
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2025-09-26 |
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r-spatialvx
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public |
Spatial forecast verification arose from verifying high-resolution forecasts, where coarser-resolution models generally are favored even when a human forecaster finds the higher-resolution model to be considerably better. Most newly proposed methods, which largely come from image analysis, computer vision, and similar, are available, with more on the way.
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2025-09-26 |
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r-wdman
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public |
There are a number of binary files associated with the 'Webdriver'/'Selenium' project (see <http://www.seleniumhq.org/download/>, <https://sites.google.com/a/chromium.org/chromedriver/>, <https://github.com/mozilla/geckodriver>, <http://phantomjs.org/download.html> and <https://github.com/SeleniumHQ/selenium/wiki/InternetExplorerDriver> for more information). This package provides functions to download these binaries and to manage processes involving them.
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2025-09-26 |
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minio
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public |
MinIO Python Library for Amazon S3 Compatible Cloud Storage for Python
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2025-09-26 |
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r-ecospat
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public |
Collection of R functions and data sets for the support of spatial ecology analyses with a focus on pre, core and post modelling analyses of species distribution, niche quantification and community assembly. Written by current and former members and collaborators of the ecospat group of Antoine Guisan, Department of Ecology and Evolution (DEE) and Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Switzerland. Read Di Cola et al. (2016) <doi:10.1111/ecog.02671> for details.
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2025-09-26 |
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pandas-stubs
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public |
Collection of Pandas stub files
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2025-09-26 |
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boto3-stubs-lite-essential
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public |
Type annotations for boto3 1.40.40, generated with mypy-boto3-builder
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2025-09-26 |
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boto3-stubs-lite
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public |
Type annotations for boto3 1.40.40, generated with mypy-boto3-builder
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2025-09-26 |
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flang
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public |
Flang is a Fortran compiler targeting LLVM.
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2025-09-26 |
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mypy_boto3_ec2
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public |
Type annotations for boto3.EC2 1.40.40 service, generated by mypy-boto3-builder
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2025-09-26 |
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libsbml
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public |
Non-official conda package of libSBML with all available packages
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2025-09-26 |
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r-ravetools
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public |
Implemented fast and memory-efficient Notch-filter, Welch-periodogram, discrete
wavelet spectrogram for minutes of high-resolution signals, fast 3D convolution,
image registration, 3D mesh manipulation; providing fundamental toolbox for
intracranial Electroencephalography (iEEG) pipelines.
Documentation and examples about 'RAVE' project are provided at
<https://openwetware.org/wiki/RAVE>, and the paper by John F. Magnotti,
Zhengjia Wang, Michael S. Beauchamp (2020) <doi:10.1016/j.neuroimage.2020.117341>;
see 'citation("ravetools")' for details.
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2025-09-26 |
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pytorch-3dunet
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public |
Versatile U-Net implementation for volumetric semantic segmentation written in PyTorch
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2025-09-26 |
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r-greg
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public |
Methods for manipulating regression models and for describing these in a style adapted for medical journals. Contains functions for generating an HTML table with crude and adjusted estimates, plotting hazard ratio, plotting model estimates and confidence intervals using forest plots, extending this to comparing multiple models in a single forest plots. In addition to the descriptive methods, there are functions for the robust covariance matrix provided by the 'sandwich' package, a function for adding non-linearities to a model, and a wrapper around the 'Epi' package's Lexis() functions for time-splitting a dataset when modeling non-proportional hazards in Cox regressions.
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2025-09-26 |
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r-bshazard
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public |
The function estimates the hazard function non parametrically from a survival object (possibly adjusted for covariates). The smoothed estimate is based on B-splines from the perspective of generalized linear mixed models. Left truncated and right censoring data are allowed. The package is based on the work in Rebora P (2014) <doi:10.32614/RJ-2014-028>.
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2025-09-26 |
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perspective
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public |
Streaming pivot visualization via WebAssembly
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2025-09-26 |
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r-parcor
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public |
The package estimates the matrix of partial correlations based on different regularized regression methods: lasso, adaptive lasso, PLS, and Ridge Regression. In addition, the package provides model selection for lasso, adaptive lasso and Ridge regression based on cross-validation.
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2025-09-26 |
