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google-cloud-spanner
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public |
Google Cloud Spanner API client library
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2025-09-22 |
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r-tester
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public |
tester allows you to test characteristics of common R objects.
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2025-09-22 |
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r-turner
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public |
Package designed for working with vectors and lists of vectors, mainly for turning them into other indexed data structures.
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2025-09-22 |
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easydiffraction
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public |
Making diffraction data analysis and modelling easy
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2025-09-22 |
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r-metamix
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public |
Resolves complex metagenomic mixtures by analysing deep sequencing data, using a mixture model based approach. The use of parallel Monte Carlo Markov chains for the exploration of the species space enables the identification of the set of species more likely to contribute to the mixture.
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2025-09-22 |
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r-diffr
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public |
An R interface to the 'codediff' JavaScript library (a copy of which is included in the package, see <https://github.com/danvk/codediff.js> for information). Allows for visualization of the difference between 2 files, usually text files or R scripts, in a browser.
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2025-09-22 |
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kanapy
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public |
Python tool for microstructure analysis and generation of 3D microstructure models
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2025-09-22 |
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r-imp4p
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public |
Functions to analyse missing value mechanisms and to impute data sets in the context of bottom-up MS-based proteomics.
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2025-09-22 |
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r-trend
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public |
The analysis of environmental data often requires the detection of trends and change-points. This package includes tests for trend detection (Cox-Stuart Trend Test, Mann-Kendall Trend Test, (correlated) Hirsch-Slack Test, partial Mann-Kendall Trend Test, multivariate (multisite) Mann-Kendall Trend Test, (Seasonal) Sen's slope, partial Pearson and Spearman correlation trend test), change-point detection (Lanzante's test procedures, Pettitt's test, Buishand Range Test, Buishand U Test, Standard Normal Homogeinity Test), detection of non-randomness (Wallis-Moore Phase Frequency Test, Bartels rank von Neumann's ratio test, Wald-Wolfowitz Test) and the two sample Robust Rank-Order Distributional Test.
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2025-09-22 |
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r-shinymobile
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public |
Develop outstanding 'shiny' apps for 'iOS', 'Android', desktop as well as beautiful 'shiny' gadgets. 'shinyMobile' is built on top of the latest 'Framework7' template <https://framework7.io>. Discover 14 new input widgets (sliders, vertical sliders, stepper, grouped action buttons, toggles, picker, smart select, ...), 2 themes (light and dark), 12 new widgets (expandable cards, badges, chips, timelines, gauges, progress bars, ...) combined with the power of server-side notifications such as alerts, modals, toasts, action sheets, sheets (and more) as well as 3 layouts (single, tabs and split).
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2025-09-22 |
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r-spatstat.explore
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public |
Functionality for exploratory data analysis and nonparametric analysis of spatial data, mainly spatial point patterns, in the 'spatstat' family of packages. (Excludes analysis of spatial data on a linear network, which is covered by the separate package 'spatstat.linnet'.) Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
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2025-09-22 |
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r-gtsummary
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public |
Creates presentation-ready tables summarizing data sets, regression models, and more. The code to create the tables is concise and highly customizable. Data frames can be summarized with any function, e.g. mean(), median(), even user-written functions. Regression models are summarized and include the reference rows for categorical variables. Common regression models, such as logistic regression and Cox proportional hazards regression, are automatically identified and the tables are pre-filled with appropriate column headers.
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2025-09-22 |
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r-dinamic
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public |
This function implements the DiNAMIC procedure for assessing the statistical significance of recurrent DNA copy number aberrations (Bioinformatics (2011) 27(5) 678 - 685).
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2025-09-22 |
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python-ace
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public |
pacemaker - a tool for fitting of interatomic potentials in a general nonlinear Atomic Cluster Expansion (ACE) form
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2025-09-22 |
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eralchemy
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public |
Simple entity relation (ER) diagrams generation
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2025-09-22 |
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skore-hub-project
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public |
the scikit-learn sidekick
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2025-09-22 |
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skore
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public |
the scikit-learn sidekick
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2025-09-22 |
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r-eml
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public |
Work with Ecological Metadata Language ('EML') files. 'EML' is a widely used metadata standard in the ecological and environmental sciences, described in Jones et al. (2006), <doi:10.1146/annurev.ecolsys.37.091305.110031>.
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2025-09-22 |
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tango-database
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public |
Tango Database Server
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2025-09-22 |
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r-riskclustr
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public |
A collection of functions related to the study of etiologic heterogeneity both across disease subtypes and across individual disease markers. The included functions allow one to quantify the extent of etiologic heterogeneity in the context of a case-control study, and provide p-values to test for etiologic heterogeneity across individual risk factors. Begg CB, Zabor EC, Bernstein JL, Bernstein L, Press MF, Seshan VE (2013) <doi: 10.1002/sim.5902>.
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2025-09-22 |
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r-lmms
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public |
Linear Mixed effect Model Splines ('lmms') implements linear mixed effect model splines for modelling and differential expression for highly dimensional data sets: investNoise() for quality control and filterNoise() for removing non-informative trajectories; lmmSpline() to model time course expression profiles and lmmsDE() performs differential expression analysis to identify differential expression between groups, time and/or group x time interaction.
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2025-09-22 |
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r-kdetrees
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public |
A non-parametric method for identifying potential outlying observations in a collection of phylogenetic trees based on the methods of Owen and Provan (2011). Such discordant trees may indicate problems with sequence annotation or tree reconstruction, or they may represent interesting biological phenomena, such as horizontal gene transfers.
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2025-09-22 |
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ovito
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public |
Scientific visualization and analysis software for atomistic simulation data
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2025-09-22 |
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r-osfr
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public |
An interface for interacting with 'OSF' (<https://osf.io>). 'osfr' enables you to access open research materials and data, or create and manage your own private or public projects.
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2025-09-22 |
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r-skellam
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public |
Functions for the Skellam distribution, including: density (pmf), cdf, quantiles and regression.
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2025-09-22 |
