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r-svd
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public |
R bindings to SVD and eigensolvers (PROPACK, nuTRLan).
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2025-04-22 |
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r-mustat
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public |
Performs Wilcox rank sum test, Kruskal rank sum test, Friedman rank sum test and McNemar test.
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2025-04-22 |
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r-ics
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public |
Implementation of Tyler, Critchley, Duembgen and Oja's (JRSS B, 2009, <doi:10.1111/j.1467-9868.2009.00706.x>) and Oja, Sirkia and Eriksson's (AJS, 2006, <http://www.ajs.or.at/index.php/ajs/article/view/vol35,%20no2%263%20-%207>) method of two different scatter matrices to obtain an invariant coordinate system or independent components, depending on the underlying assumptions.
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2025-04-22 |
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r-genkern
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public |
Computes generalised KDEs
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2025-04-22 |
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r-genabel
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public |
a package for genome-wide association analysis between quantitative or binary traits and single-nucleotide polymorphisms (SNPs).
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2025-04-22 |
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r-drc
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public |
Analysis of dose-response data is made available through a suite of flexible and versatile
model fitting and after-fitting functions.
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2025-04-22 |
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r-dmt
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public |
Probabilistic dependency modeling toolkit.
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2025-04-22 |
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r-taxize
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public |
Interacts with a suite of web 'APIs' for taxonomic tasks, such as getting database specific taxonomic identifiers, verifying species names, getting taxonomic hierarchies, fetching downstream and upstream taxonomic names, getting taxonomic synonyms, converting scientific to common names and vice versa, and more.
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2025-04-22 |
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r-wikitaxa
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public |
'Taxonomic' information from 'Wikipedia', 'Wikicommons', 'Wikispecies', and 'Wikidata'. Functions included for getting taxonomic information from each of the sources just listed, as well performing taxonomic search.
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2025-04-22 |
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r-wikidatar
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public |
An API client for the Wikidata <https://www.wikidata.org/wiki/Wikidata:Main_Page> store of semantic data.
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2025-04-22 |
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r-wikipedir
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public |
A wrapper for the MediaWiki API, aimed particularly at the Wikimedia 'production' wikis, such as Wikipedia. It can be used to retrieve page text, information about users or the history of pages, and elements of the category tree.
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2025-04-22 |
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r-ritis
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public |
An interface to the Integrated Taxonomic Information System ('ITIS') (<https://www.itis.gov>). Includes functions to work with the 'ITIS' REST API methods (<https://www.itis.gov/ws_description.html>), as well as the 'Solr' web service (<https://www.itis.gov/solr_documentation.html>).
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2025-04-22 |
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r-rastervis
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public |
Methods for enhanced visualization and interaction with raster data. It implements visualization methods for quantitative data and categorical data, both for univariate and multivariate rasters. It also provides methods to display spatiotemporal rasters, and vector fields. See the website for examples.
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2025-04-22 |
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r-osmar
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public |
This package provides infrastructure to access OpenStreetMap data from different sources, to work with the data in common R manner, and to convert data into available infrastructure provided by existing R packages (e.g., into sp and igraph objects).
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2025-04-22 |
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r-natserv
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public |
Interface to 'NatureServe' (<http://www.natureserve.org>). Includes methods to get data, image metadata, search taxonomic names, and make maps.
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2025-04-22 |
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r-bold
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public |
A programmatic interface to the Web Service methods provided by Bold Systems (<http://www.boldsystems.org/>) for genetic 'barcode' data. Functions include methods for searching by sequences by taxonomic names, ids, collectors, and institutions; as well as a function for searching for specimens, and downloading trace files.
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2025-04-22 |
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r-solrium
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public |
Provides a set of functions for querying and parsing data from 'Solr' (<https://lucene.apache.org/solr>) 'endpoints' (local and remote), including search, 'faceting', 'highlighting', 'stats', and 'more like this'. In addition, some functionality is included for creating, deleting, and updating documents in a 'Solr' 'database'.
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2025-04-22 |
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r-worrms
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public |
Client for World Register of Marine Species (<http://www.marinespecies.org/>). Includes functions for each of the API methods, including searching for names by name, date and common names, searching using external identifiers, fetching synonyms, as well as fetching taxonomic children and taxonomic classification.
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2025-04-22 |
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r-httpcode
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public |
Find and explain the meaning of 'HTTP' status codes. Functions included for searching for codes by full or partial number, by message, and get appropriate dog and cat images for many status codes.
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2025-04-22 |
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r-data.tree
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public |
Create tree structures from hierarchical data, and traverse the tree in various orders. Aggregate, cumulate, print, plot, convert to and from data.frame and more. Useful for decision trees, machine learning, finance, conversion from and to JSON, and many other applications.
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2025-04-22 |
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r-rotl
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public |
An interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all named species.
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2025-04-22 |
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r-rncl
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public |
An interface to the Nexus Class Library which allows parsing of NEXUS, Newick and other phylogenetic tree file formats. It provides elements of the file that can be used to build phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'. This functionality is demonstrated with 'read_newick_phylo()' and 'read_nexus_phylo()'.
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2025-04-22 |
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monkeytype
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public |
Generating type annotations from sampled production types
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2025-04-22 |
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giza
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public |
A drop-in replacement for PGPLOT using C and Cairo.
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2025-04-22 |
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pytest-smartcov
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public |
Smart coverage measurement for py.test.
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2025-04-22 |
