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r-glm2
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public |
Fits generalized linear models using the same model specification as glm in the stats package, but with a modified default fitting method that provides greater stability for models that may fail to converge using glm.
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2025-04-22 |
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r-timsac
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public |
Functions for statistical analysis, prediction and control of time series based mainly on Akaike and Nakagawa (1988) <ISBN 978-90-277-2786-2>.
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2025-04-22 |
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r-diffr
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public |
An R interface to the 'codediff' JavaScript library (a copy of which is included in the package, see <https://github.com/danvk/codediff.js> for information). Allows for visualization of the difference between 2 files, usually text files or R scripts, in a browser.
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2025-04-22 |
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r-rootsolve
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public |
Routines to find the root of nonlinear functions, and to perform steady-state and equilibrium analysis of ordinary differential equations (ODE). Includes routines that: (1) generate gradient and jacobian matrices (full and banded), (2) find roots of non-linear equations by the 'Newton-Raphson' method, (3) estimate steady-state conditions of a system of (differential) equations in full, banded or sparse form, using the 'Newton-Raphson' method, or by dynamically running, (4) solve the steady-state conditions for uni-and multicomponent 1-D, 2-D, and 3-D partial differential equations, that have been converted to ordinary differential equations by numerical differencing (using the method-of-lines approach). Includes fortran code.
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2025-04-22 |
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r-clues
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public |
We developed the clues R package to provide functions for automatically estimating the number of clusters and getting the final cluster partition without any input parameter except the stopping rule for convergence. The package also provides functions to evaluate and compare the performances of partitions of a data set both numerically and graphically.
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2025-04-22 |
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r-rmtstat
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public |
Functions for working with the Tracy-Widom laws and other distributions related to the eigenvalues of large Wishart matrices. The tables for computing the Tracy-Widom densities and distribution functions were computed by Momar Dieng's MATLAB package "RMLab" (formerly available on his homepage at http
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2025-04-22 |
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r-rcpproll
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public |
Provides fast and efficient routines for common rolling / windowed operations. Routines for the efficient computation of windowed mean, median, sum, product, minimum, maximum, standard deviation and variance are provided.
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2025-04-22 |
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r-qtlrel
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public |
This software provides tools for quantitative trait mapping in populations such as advanced intercross lines where relatedness among individuals should not be ignored. It can estimate background genetic variance components, impute missing genotypes, simulate genotypes, perform a genome scan for putative quantitative trait loci (QTL), and plot mapping results. It also has functions to calculate identity coefficients from pedigrees, especially suitable for pedigrees that consist of a large number of generations, or estimate identity coefficients from genotypic data in certain circumstances.
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2025-04-22 |
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r-rsvgtipsdevice
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public |
A graphics device for R that uses the w3.org xml standard for Scalable Vector Graphics. This version supports tooltips with 1 to 3 lines, hyperlinks, and line styles.
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2025-04-22 |
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r-patpro
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public |
Quickly and easily visualize longitudinal microbiome profiles using standard output from the QIIME microbiome analysis toolkit (see <http://qiime.org> for more information).
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2025-04-22 |
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django-reversion
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public |
django-reversion is an extension to the Django web framework that provides version control for model instances.
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2025-04-22 |
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smokesignal
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public |
A simple python library for sending and receiving signals
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2025-04-22 |
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r-network
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public |
Tools to create and modify network objects. The network class can represent a range of relational data types, and supports arbitrary vertex/edge/graph attributes.
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2025-04-22 |
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r-matching
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public |
Provides functions for multivariate and propensity score matching and for finding optimal balance based on a genetic search algorithm. A variety of univariate and multivariate metrics to determine if balance has been obtained are also provided.
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2025-04-22 |
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r-infotheo
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public |
This package implements various measures of information theory based on several entropy estimators.
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2025-04-22 |
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r-smvar
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public |
Implements the structural model for variances in order to detect differentially expressed genes from gene expression data
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2025-04-22 |
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r-poilog
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public |
Functions for obtaining the density, random deviates and maximum likelihood estimates of the Poisson lognormal distribution and the bivariate Poisson lognormal distribution.
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2025-04-22 |
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r-matrixcalc
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public |
A collection of functions to support matrix calculations for probability, econometric and numerical analysis. There are additional functions that are comparable to APL functions which are useful for actuarial models such as pension mathematics. This package is used for teaching and research purposes at the Department of Finance and Risk Engineering, New York University, Polytechnic Institute, Brooklyn, NY 11201.
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2025-04-22 |
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r-ggm
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public |
Functions and datasets for maximum likelihood fitting of some classes of graphical Markov models.
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2025-04-22 |
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adept
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public |
Fast automatic differentiation library in C++
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2025-04-22 |
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poap
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public |
Python Optimization Asynchronous Plumbing.
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2025-04-22 |
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optlang
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public |
optlang - sympy based mathematical programming language
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2025-04-22 |
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r-polynomf
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public |
Implements univariate polynomial operations in R, including polynomial arithmetic, finding zeros, plotting, and some operations on lists of polynomials.
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2025-04-22 |
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r-qtl
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public |
Analysis of experimental crosses to identify genes (called quantitative trait loci, QTLs) contributing to variation in quantitative traits. Broman et al. (2003) <doi:10.1093/bioinformatics/btg112>.
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2025-04-22 |
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reaper
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public |
REAPER: Robust Epoch And Pitch EstimatoR
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2025-04-22 |
