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r-naivebayes
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public |
In this implementation of the Naive Bayes classifier following class conditional distributions are available: Bernoulli, Categorical, Gaussian, Poisson and non-parametric representation of the class conditional density estimated via Kernel Density Estimation.
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2025-09-23 |
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r-edmdata
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public |
Collection of data sets from various assessments that can be used to evaluate psychometric models. These data sets have been analyzed in the following papers that introduced new methodology as part of the application section: Chen, Y., Culpepper, S. A., & Liang, F. (2020) <doi:10.1007/s11336-019-09693-2> Culpepper, S. A. (2019a) <doi:10.1007/s11336-019-09683-4>, Culpepper, S. A. (2019b) <doi:10.1007/s11336-018-9643-8>, Culpepper, S. A., & Chen, Y. (2019) <doi:10.3102/1076998618791306>, Culpepper, S. A., & Balamuta, J. J. (2017) <doi:10.1007/s11336-015-9484-7>, and Culpepper, S. A. (2015) <doi:10.3102/1076998615595403>.
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2025-09-23 |
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r-optimalcutpoints
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public |
Computes optimal cutpoints for diagnostic tests or continuous markers. Various approaches for selecting optimal cutoffs have been implemented, including methods based on cost-benefit analysis and diagnostic test accuracy measures (Sensitivity/Specificity, Predictive Values and Diagnostic Likelihood Ratios). Numerical and graphical output for all methods is easily obtained.
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2025-09-23 |
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metview-batch
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public |
ECMWF Metview Copyright 2007-2022 ECMWF.
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2025-09-23 |
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r-rbeta2009
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public |
The package contains functions to generate random numbers from the beta distribution and random vectors from the Dirichlet distribution.
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2025-09-23 |
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r-enshuman
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public |
Gene information from 'Ensembl' genome builds 'GRCh38.p14' and 'GRCh37.p13' to use. with the 'topr' package. The datasets were originally downloaded from <https://ftp.ensembl.org/pub/current/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.gtf.gz> and <https://ftp.ensembl.org/pub/grch37/current/gtf/homo_sapiens/Homo_sapiens.GRCh37.87.gtf.gz> and converted into the format required by the 'topr' package. See <https://github.com/totajuliusd/topr?tab=readme-ov-file#how-to-use-topr-with-other-species-than-human> to see the required format.
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2025-09-23 |
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r-ctv
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public |
Infrastructure for task views to CRAN-style repositories: Querying task views and installing the associated packages (client-side tools), generating HTML pages and storing task view information in the repository (server-side tools).
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2025-09-23 |
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r-rayrender
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public |
Render scenes using pathtracing. Build 3D scenes out of spheres, cubes, planes, disks, triangles, cones, curves, line segments, cylinders, ellipsoids, and 3D models in the 'Wavefront' OBJ file format or the PLY Polygon File Format. Supports several material types, textures, multicore rendering, and tone-mapping. Based on the "Ray Tracing in One Weekend" book series. Peter Shirley (2018) <https://raytracing.github.io>.
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2025-09-23 |
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r-checkpoint
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public |
The goal of checkpoint is to solve the problem of package reproducibility in R. Specifically, checkpoint allows you to install packages as they existed on CRAN on a specific snapshot date as if you had a CRAN time machine. To achieve reproducibility, the checkpoint() function installs the packages required or called by your project and scripts to a local library exactly as they existed at the specified point in time. Only those packages are available to your project, thereby avoiding any package updates that came later and may have altered your results. In this way, anyone using checkpoint's checkpoint() can ensure the reproducibility of your scripts or projects at any time. To create the snapshot archives, once a day (at midnight UTC) Microsoft refreshes the Austria CRAN mirror on the "Microsoft R Archived Network" server (<https://mran.microsoft.com/>). Immediately after completion of the rsync mirror process, the process takes a snapshot, thus creating the archive. Snapshot archives exist starting from 2014-09-17.
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2025-09-23 |
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panic-gui
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public |
PANIC, a python Alarm System for TANGO
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2025-09-23 |
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panic
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public |
PANIC, a python Alarm System for TANGO
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2025-09-23 |
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r-packer
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public |
Enforces good practice and provides convenience functions to make work with 'JavaScript' not just easier but also scalable. It is a robust wrapper to 'NPM', 'yarn', and 'webpack' that enables to compartmentalize 'JavaScript' code, leverage 'NPM' and 'yarn' packages, include 'TypeScript', 'React', or 'Vue' in web applications, and much more.
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2025-09-23 |
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r-documenter
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public |
It is sometimes necessary to create documentation for all files in a directory. Doing so by hand can be very tedious. This task is made fast and reproducible using the functionality of 'documenter'. It aggregates all text files in a directory and its subdirectories into a single word document in a semi-automated fashion.
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2025-09-23 |
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r-azurestor
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public |
Manage storage in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/en-us/product-categories/storage/>. On the admin side, 'AzureStor' includes features to create, modify and delete storage accounts. On the client side, it includes an interface to blob storage, file storage, and 'Azure Data Lake Storage Gen2': upload and download files and blobs; list containers and files/blobs; create containers; and so on. Authenticated access to storage is supported, via either a shared access key or a shared access signature (SAS). Part of the 'AzureR' family of packages.
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2025-09-23 |
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r-dimred
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public |
A collection of dimensionality reduction techniques from R packages and a common interface for calling the methods.
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2025-09-23 |
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r-preseqr
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public |
Originally as an R version of Preseq <doi:10.1038/nmeth.2375>, the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) <arXiv:1607.02804v3>.
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2025-09-23 |
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r-indicspecies
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public |
Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites [De Caceres & Legendre (2009) <doi:10.1890/08-1823.1>]. Also includes functions to measure species niche breadth using resource categories [De Caceres et al. (2011) <doi:10.1111/J.1600-0706.2011.19679.x>].
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2025-09-23 |
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pyrosar
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public |
A Python Framework for Large-Scale SAR Satellite Data Processing
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2025-09-23 |
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r-chnosz
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public |
An integrated set of tools for thermodynamic calculations in aqueous geochemistry and geobiochemistry. Functions are provided for writing balanced reactions to form species from user-selected basis species and for calculating the standard molal properties of species and reactions, including the standard Gibbs energy and equilibrium constant. Calculations of the non-equilibrium chemical affinity and equilibrium chemical activity of species can be portrayed on diagrams as a function of temperature, pressure, or activity of basis species; in two dimensions, this gives a maximum affinity or predominance diagram. The diagrams have formatted chemical formulas and axis labels, and water stability limits can be added to Eh-pH, oxygen fugacity- temperature, and other diagrams with a redox variable. The package has been developed to handle common calculations in aqueous geochemistry, such as solubility due to complexation of metal ions, mineral buffers of redox or pH, and changing the basis species across a diagram ("mosaic diagrams"). CHNOSZ also implements a group additivity algorithm for the standard thermodynamic properties of proteins.
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2025-09-23 |
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reskit
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public |
Renewable Energy Simulation toolkit
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2025-09-23 |
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r-mrgsolve
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public |
Fast simulation from ordinary differential equation (ODE) based models typically employed in quantitative pharmacology and systems biology.
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2025-09-23 |
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storage3
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public |
Python Client library to interact with Supabase Storage
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2025-09-23 |
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containers-common
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public |
Location for shared common files in github.com/containers repos.
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2025-09-23 |
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megaradrp
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public |
MEGARA Data Reduction Pipeline
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2025-09-23 |
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r-rlecuyer
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public |
Provides an interface to the C implementation of the random number generator with multiple independent streams developed by L'Ecuyer et al (2002). The main purpose of this package is to enable the use of this random number generator in parallel R applications.
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2025-09-23 |
