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pyladoc
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public |
Package for generating HTML and PDF/latex from python code
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2025-09-24 |
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r-distill
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public |
Scientific and technical article format for the web. 'Distill' articles feature attractive, reader-friendly typography, flexible layout options for visualizations, and full support for footnotes and citations.
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2025-09-24 |
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r-smvar
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Implements the structural model for variances in order to detect differentially expressed genes from gene expression data
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2025-09-24 |
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r-stapler
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An implementation of Simultaneous Truth and Performance Level Estimation (STAPLE) <doi:10.1109/TMI.2004.828354>. This method is used when there are multiple raters for an object, typically an image, and this method fuses these ratings into one rating. It uses an expectation-maximization method to estimate this rating and the individual specificity/sensitivity for each rater.
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2025-09-24 |
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earthengine-api
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Earth Engine Python API
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2025-09-24 |
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r-seurat
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A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.
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2025-09-24 |
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shapely
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Python package for manipulation and analysis of geometric objects in the Cartesian plane
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2025-09-24 |
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pyrxiv
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public |
A Python package for retrieving arXiv papers and filter them out with respect to some specific regex pattern.
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2025-09-24 |
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ogstools
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A collection of Python tools aimed at evolving into a modeling toolchain around OpenGeoSys.
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2025-09-24 |
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globus-compute-endpoint
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public |
Globus Compute: High Performance Function Serving for Science
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2025-09-24 |
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pycurl
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A Python Interface To The cURL library
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2025-09-24 |
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r-xnomial
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Tests whether a set of counts fit a given expected ratio. For example, a genetic cross might be expected to produce four types in the relative frequencies of 9:3:3:1. To see whether a set of observed counts fits this expectation, one can examine all possible outcomes with xmulti() or a random sample of them with xmonte() and find the probability of an observation deviating from the expectation by at least as much as the observed. As a measure of deviation from the expected, one can use the log-likelihood ratio, the multinomial probability, or the classic chi-square statistic. A histogram of the test statistic can also be plotted and compared with the asymptotic curve.
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2025-09-24 |
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r-backbone
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Provides methods for extracting from a weighted graph a binary or signed backbone that retains only the significant edges. The user may input a weighted graph, or a bipartite graph from which a weighted graph is first constructed via projection. Backbone extraction methods include the stochastic degree sequence model (SDSM; Neal, Z. P. (2014). <doi:10.1016/j.socnet.2014.06.001>), the fixed degree sequence model (FDSM; Zweig, K. A., and Kaufmann, M. (2011). <doi:10.1007/s13278-011-0021-0>), the fixed row model (FRM; Neal, Z. P. (2013). <doi:10.1007/s13278-013-0107-y>), the fixed column model (FCM; Neal, Domagalski, and Sagan (2021). <arXiv:2105.13396>), the fixed fill model (FFM; Neal, Domagalski, and Sagan (2021). <arXiv:2105.13396>), and a universal threshold method.
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2025-09-24 |
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r-linkcomm
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Link communities reveal the nested and overlapping structure in networks, and uncover the key nodes that form connections to multiple communities. linkcomm provides a set of tools for generating, visualizing, and analysing link communities in networks of arbitrary size and type. The linkcomm package also includes tools for generating, visualizing, and analysing Overlapping Cluster Generator (OCG) communities.
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2025-09-24 |
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r-assotester
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R package with statistical tests and methods for genetic association studies with emphasis on rare variants and binary (dichotomous) traits
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2025-09-24 |
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ansys-api-geometry
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public |
Autogenerated Python gRPC interface package for ansys-api-geometry
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2025-09-24 |
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r-bc3net
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Implementation of the BC3NET algorithm for gene regulatory network inference (de Matos Simoes and Frank Emmert-Streib, Bagging Statistical Network Inference from Large-Scale Gene Expression Data, PLoS ONE 7(3): e33624, <doi:10.1371/journal.pone.0033624>).
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2025-09-24 |
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r-rvaidememoire
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Contains miscellaneous functions useful in biostatistics, mostly univariate and multivariate testing procedures with a special emphasis on permutation tests. Many functions intend to simplify user's life by shortening existing procedures or by implementing plotting functions that can be used with as many methods from different packages as possible.
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2025-09-24 |
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r-graphicalvar
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Estimates within and between time point interactions in experience sampling data, using the Graphical vector autoregression model in combination with regularization. See also Epskamp, Waldorp, Mottus & Borsboom (2018) <doi:10.1080/00273171.2018.1454823>.
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2025-09-24 |
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r-esquisse
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A 'shiny' gadget to create 'ggplot2' charts interactively with drag-and-drop to map your variables. You can quickly visualize your data accordingly to their type, export to 'PNG' or 'PowerPoint', and retrieve the code to reproduce the chart.
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2025-09-24 |
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safety
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public |
Safety checks your installed dependencies for known security vulnerabilities.
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2025-09-24 |
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r-kknn
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Weighted k-Nearest Neighbors for Classification, Regression and Clustering.
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2025-09-24 |
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r-officedown
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Allows production of 'Microsoft' corporate documents from 'R Markdown' by reusing formatting defined in 'Microsoft Word' documents. You can reuse table styles, list styles but also add column sections, landscape oriented pages. Table and image captions as well as cross-references are transformed into 'Microsoft Word' fields, allowing documents edition and merging without issue with references; the syntax conforms to the 'bookdown' cross-reference definition. Objects generated by the 'officer' package are also supported in the 'knitr' chunks. 'Microsoft PowerPoint' presentations also benefit from this as well as the ability to produce editable vector graphics in 'PowerPoint' and also to define placeholder where content is to be added.
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2025-09-24 |
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r-graphtweets
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Allows building an edge table from data frame of tweets, also provides function to build nodes and another create a temporal graph.
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2025-09-24 |
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r-tidylog
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Provides feedback about 'dplyr' and 'tidyr' operations.
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2025-09-24 |
