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r-textminer
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An aid for text mining in R, with a syntax that should be familiar to experienced R users. Provides a wrapper for several topic models that take similarly-formatted input and give similarly-formatted output. Has additional functionality for analyzing and diagnostics for topic models.
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2025-09-24 |
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syncthing
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Open Source Continuous File Synchronization
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2025-09-24 |
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flock
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flock(1) locks files
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2025-09-24 |
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r-igraph
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Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.
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2025-09-24 |
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r-mgrs
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The 'Military Grid Reference System' ('MGRS') is the geocoordinate standard used by 'NATO' militaries for locating points on the earth. The 'MGRS' is derived from the 'Universal Transverse Mercator' ('UTM') grid system and the universal polar stereographic ('UPS') grid system, but uses a different labeling convention. The 'MGRS' is used for the entire earth. Methods are provided to convert 'MGRS' coordinates to and from other coordinate systems.
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2025-09-24 |
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openjph
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Open source implementation of High-throughput JPEG2000 (HTJ2K).
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2025-09-24 |
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pycobertura
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A Cobertura coverage parser that can diff reports and show coverage progress.
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2025-09-24 |
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rhumba
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These are the R bindings from Mamba to R, allowing users to install compiled packages in their environments.
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2025-09-24 |
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r-cometexacttest
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An algorithm for identifying combinations of mutually exclusive alterations in cancer genomes. CoMEt represents the mutations in a set M of k genes with a 2^k dimensional contingency table, and then computes the tail probability of observing T(M) exclusive alterations using an exact statistical test.
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2025-09-24 |
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r-vayr
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Position adjustments for 'ggplot2' to implement "visualize as you randomize" principles, which can be especially useful when plotting experimental data.
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2025-09-24 |
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r-openxlsx2
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Simplifies the creation of 'xlsx' files by providing a high level interface to writing, styling and editing worksheets.
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2025-09-24 |
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r-ukbnmr
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A suite of utilities for working with the UK Biobank <https://www.ukbiobank.ac.uk/> Nuclear Magnetic Resonance spectroscopy (NMR) metabolomics data <https://biobank.ndph.ox.ac.uk/showcase/label.cgi?id=220>. Includes functions for extracting biomarkers from decoded UK Biobank field data, removing unwanted technical variation from biomarker concentrations, computing an extended set of lipid, fatty acid, and cholesterol fractions, and for re-deriving composite biomarkers and ratios after adjusting data for unwanted biological variation. For further details on methods see Ritchie SC et al. Sci Data (2023) <doi:10.1038/s41597-023-01949-y>.
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2025-09-24 |
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r-duckplyr
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A drop-in replacement for 'dplyr', powered by 'DuckDB' for performance. Also defines a set of generics that provide a low-level implementer's interface for the high-level user interface of 'dplyr'.
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2025-09-24 |
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r-blockmodeling
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This is primarily meant as an implementation of generalized blockmodeling for valued networks. In addition, measures of similarity or dissimilarity based on structural equivalence and regular equivalence (REGE algorithms) can be computed and partitioned matrices can be plotted: Žiberna (2007)<doi:10.1016/j.socnet.2006.04.002>, Žiberna (2008)<doi:10.1080/00222500701790207>, Žiberna (2014)<doi:10.1016/j.socnet.2014.04.002>.
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2025-09-24 |
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r-dbmodelr
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public |
An ORM in R
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2025-09-24 |
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r-rlab
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public |
Functions and Datasets Required for ST370 class
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2025-09-24 |
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r-strawr
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public |
API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).
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2025-09-24 |
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r-qiimer
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Open QIIME output files in R, compute statistics, and create plots from the data.
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2025-09-24 |
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r-rcsf
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public |
Cloth Simulation Filter (CSF) is an airborne LiDAR (Light Detection and Ranging) ground points filtering algorithm which is based on cloth simulation. It tries to simulate the interactions between the cloth nodes and the corresponding LiDAR points, the locations of the cloth nodes can be determined to generate an approximation of the ground surface.
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2025-09-24 |
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r-tidycmprsk
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Provides an intuitive interface for working with the competing risk endpoints. The package wraps the 'cmprsk' package, and exports functions for univariate cumulative incidence estimates and competing risk regression. Methods follow those introduced in Fine and Gray (1999) <doi:10.1002/sim.7501>.
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2025-09-24 |
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r-cyphr
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Encryption wrappers, using low-level support from 'sodium' and 'openssl'. 'cyphr' tries to smooth over some pain points when using encryption within applications and data analysis by wrapping around differences in function names and arguments in different encryption providing packages. It also provides high-level wrappers for input/output functions for seamlessly adding encryption to existing analyses.
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2025-09-24 |
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r-emoa
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Collection of building blocks for the design and analysis of evolutionary multiobjective optimization algorithms.
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2025-09-24 |
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r-shinipsum
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Prototype your 'shiny' apps quickly with these Lorem-Ipsum helper functions. Generate random elements for 'shiny' outputs that can be used as placeholder in your application.
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2025-09-24 |
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r-spscomps
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The systemPipeShiny (SPS) framework comes with many UI and server components. However, installing the whole framework is heavy and takes some time. If you would like to use UI and server components from SPS in your own Shiny apps, do not hesitate to try this package.
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2025-09-24 |
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r-howmany
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When testing multiple hypotheses simultaneously, this package provides functionality to calculate a lower bound for the number of correct rejections (as a function of the number of rejected hypotheses), which holds simultaneously -with high probability- for all possible number of rejections. As a special case, a lower bound for the total number of false null hypotheses can be inferred. Dependent test statistics can be handled for multiple tests of associations. For independent test statistics, it is sufficient to provide a list of p-values.
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2025-09-24 |
