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r-nmfbin
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public |
Factorize binary matrices into rank-k components using the logistic function in the updating process. See e.g. Tomé et al (2015) <doi:10.1007/s11045-013-0240-9> .
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2025-09-24 |
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r-pharmartf
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public |
Enhanced RTF wrapper written in R for use with existing R tables packages such as 'Huxtable' or 'GT'. This package fills a gap where tables in certain packages can be written out to RTF, but cannot add certain metadata or features to the document that are required/expected in a report for a regulatory submission, such as multiple levels of titles and footnotes, making the document landscape, and controlling properties such as margins.
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2025-09-24 |
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r-sdmpredictors
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public |
Terrestrial and marine predictors for species distribution modelling from multiple sources, including WorldClim <https://www.worldclim.org/>,, ENVIREM <https://envirem.github.io/>, Bio-ORACLE <https://bio-oracle.org/> and MARSPEC <http://www.marspec.org/>.
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2025-09-24 |
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r-secutrialr
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public |
Seamless and standardized interaction with data exported from the clinical data management system (CDMS) 'secuTrial'<https://www.secutrial.com>. The primary data export the package works with is a standard non-rectangular export.
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2025-09-24 |
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r-shinysky
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public |
A set of Shiny UI components includings alerts and styled buttons
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2025-09-24 |
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r-selenider
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public |
A user-friendly wrapper for web automation, using either 'chromote' or 'selenium'. Provides a simple and consistent API to make web scraping and testing scripts easy to write and understand. Elements are lazy, and automatically wait for the website to be valid, resulting in reliable and reproducible code, with no visible impact on the experience of the programmer.
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2025-09-24 |
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r-rcppcnpy
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public |
The 'cnpy' library written by Carl Rogers provides read and write facilities for files created with (or for) the 'NumPy' extension for 'Python'. Vectors and matrices of numeric types can be read or written to and from files as well as compressed files. Support for integer files is available if the package has been built with -std=c++11 which should be the default on all platforms since the release of R 3.3.0.
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2025-09-24 |
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r-tplyr
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public |
A traceability focused tool created to simplify the data manipulation necessary to create clinical summaries.
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2025-09-24 |
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r-webmockr
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public |
Stubbing and setting expectations on 'HTTP' requests. Includes tools for stubbing 'HTTP' requests, including expected request conditions and response conditions. Match on 'HTTP' method, query parameters, request body, headers and more. Can be used for unit tests or outside of a testing context.
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2025-09-24 |
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r-tidydr
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public |
Dimensionality reduction (DR) is widely used in many domain for analyzing and visualizing high-dimensional data. 'tidydr' provides uniform output and is compatible with multiple methods, including 'prcomp', 'mds', 'Rtsne'. etc.
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2025-09-24 |
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r-ttdo
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public |
The 'tinytest' package offers a light-weight zero-dependency unit-testing framework to which this package adds support via the 'diffobj' package for 'diff'-style textual comparison of R objects, as well as via 'tinysnapshot' package for visual differences in plots.
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2025-09-24 |
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r-micropan
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public |
A collection of functions for computations and visualizations of microbial pan-genomes.
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2025-09-24 |
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r-cnogpro
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public |
Methods for assigning copy number states and breakpoints in resequencing experiments of prokaryotic organisms.
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2025-09-24 |
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r-tnet
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public |
Binary ties limit the richness of network analyses as relations are unique. The two-mode structure contains a number of features lost when projection it to a one-mode network. Longitudinal datasets allow for an understanding of the causal relationship among ties, which is not the case in cross-sectional datasets as ties are dependent upon each other.
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2025-09-24 |
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r-sybil
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public |
This Systems Biology Package (Gelius-Dietrich et. al. (2012) <doi:10.1186/1752-0509-7-125>) implements algorithms for constraint based analyses of metabolic networks, e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis. The package is easily extendable for additional algorithms. Most of the current LP/MILP solvers are supported via additional packages.
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2025-09-24 |
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r-highcharter
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public |
A wrapper for the 'Highcharts' library including shortcut functions to plot R objects. 'Highcharts' <http://www.highcharts.com/> is a charting library offering numerous chart types with a simple configuration syntax.
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2025-09-24 |
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yarn
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public |
Fast, reliable, and secure dependency management.
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2025-09-24 |
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r-rmcfs
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public |
MCFS-ID (Monte Carlo Feature Selection and Interdependency Discovery) is a Monte Carlo method-based tool for feature selection. It also allows for the discovery of interdependencies between the relevant features. MCFS-ID is particularly suitable for the analysis of high-dimensional, 'small n large p' transactional and biological data. M. Draminski, J. Koronacki (2018) <doi:10.18637/jss.v085.i12>.
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2025-09-24 |
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r-ggflowchart
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public |
Flowcharts can be a useful way to visualise complex processes. This package uses the layered grammar of graphics of 'ggplot2' to create simple flowcharts.
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2025-09-24 |
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r-ggm
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public |
Functions and datasets for maximum likelihood fitting of some classes of graphical Markov models.
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2025-09-24 |
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r-smotefamily
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public |
A collection of various oversampling techniques developed from SMOTE is provided. SMOTE is a oversampling technique which synthesizes a new minority instance between a pair of one minority instance and one of its K nearest neighbor. (see <https://www.jair.org/media/953/live-953-2037-jair.pdf> for more information) Other techniques adopt this concept with other criteria in order to generate balanced dataset for class imbalance problem.
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2025-09-24 |
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qe
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public |
QUANTUM ESPRESSO (opEn-Source Package for Research in Electronic Structure, Simulation, and Optimization)
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2025-09-24 |
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r-c3net
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public |
This package allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET.
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2025-09-24 |
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pygeogrids
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public |
Creation and handling of Discrete Global Grids or Point collections.
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2025-09-24 |
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pixi-build-api-version
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public |
The protocol version for pixi build backends.
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2025-09-24 |
