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r-htmltab
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public |
HTML tables are a valuable data source but extracting and recasting these data into a useful format can be tedious. This package allows to collect structured information from HTML tables. It is similar to `readHTMLTable()` of the XML package but provides three major advantages. First, the function automatically expands row and column spans in the header and body cells. Second, users are given more control over the identification of header and body rows which will end up in the R table, including semantic header information that appear throughout the body. Third, the function preprocesses table code, corrects common types of malformations, removes unneeded parts and so helps to alleviate the need for tedious post-processing.
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2025-09-24 |
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libpostal
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public |
C library for parsing/normalizing street addresses around the world.
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2025-09-24 |
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r-dtangle
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public |
Deconvolving cell types from high-throughput gene profiling data.
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2025-09-24 |
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r-rcppsimdjson
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public |
The 'JSON' format is ubiquitous for data interchange, and the 'simdjson' library written by Daniel Lemire (and many contributors) provides a high-performance parser for these files which by relying on parallel 'SIMD' instruction manages to parse these files as faster than disk speed. See the <arXiv:1902.08318> paper for more details about 'simdjson'. This package parses 'JSON' from string, file, or remote URLs under a variety of settings.
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2025-09-24 |
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sqlframe
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public |
Turning PySpark Into a Universal DataFrame API
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2025-09-24 |
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r-gsmoothr
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public |
Tools rewritten in C for various smoothing tasks
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2025-09-24 |
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r-odbc
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public |
A DBI-compatible interface to ODBC databases.
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2025-09-24 |
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r-ibd
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public |
A collection of several utility functions related to binary incomplete block designs. The package contains function to generate A- and D-efficient binary incomplete block designs with given numbers of treatments, number of blocks and block size. The package also contains function to generate an incomplete block design with specified concurrence matrix. There are functions to generate balanced treatment incomplete block designs and incomplete block designs for test versus control treatments comparisons with specified concurrence matrix. Package also allows performing analysis of variance of data and computing estimated marginal means of factors from experiments using a connected incomplete block design. Tests of hypothesis of treatment contrasts in incomplete block design set up is supported.
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2025-09-24 |
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r-sortable
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public |
Enables drag-and-drop behaviour in Shiny apps, by exposing the functionality of the 'SortableJS' <https://sortablejs.github.io/Sortable/> JavaScript library as an 'htmlwidget'. You can use this in Shiny apps and widgets, 'learnr' tutorials as well as R Markdown. In addition, provides a custom 'learnr' question type - 'question_rank()' - that allows ranking questions with drag-and-drop.
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2025-09-24 |
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uiua
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public |
A stack-based array programming language
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2025-09-24 |
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r-gptk
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public |
The gptk package implements a general-purpose toolkit for Gaussian process regression with a variety of covariance functions (e.g. RBF, Mattern, polynomial, etc). Based on a MATLAB implementation by Neil D. Lawrence. See inst/doc/index.html for more details.
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2025-09-24 |
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r-funspotr
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public |
Helpers for parsing out the R functions and packages used in R scripts and notebooks.
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2025-09-24 |
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r-survidinri
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public |
Performs inference for a class of measures to compare competing risk prediction models with censored survival data. The class includes the integrated discrimination improvement index (IDI) and category-less net reclassification index (NRI).
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2025-09-24 |
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r-sdcmicro
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public |
Data from statistical agencies and other institutions are mostly confidential. This package (see also Templ, Kowarik and Meindl (2017) <doi:10.18637/jss.v067.i04>) can be used for the generation of anonymized (micro)data, i.e. for the creation of public- and scientific-use files. The theoretical basis for the methods implemented can be found in Templ (2017) <doi:10.1007/978-3-319-50272-4>. Various risk estimation and anonymisation methods are included. Note that the package includes a graphical user interface (Meindl and Templ, 2019 <doi:10.3390/a12090191>) that allows to use various methods of this package.
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2025-09-24 |
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r-fastqcr
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public |
'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.
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2025-09-24 |
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r-ymlthis
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public |
Write 'YAML' front matter for R Markdown and related documents. yml_*() functions write 'YAML' and use_*() functions let you write the resulting 'YAML' to your clipboard or to .yml files related to your project.
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2025-09-24 |
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r-beanplot
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public |
Plots univariate comparison graphs, an alternative to boxplot/stripchart/violin plot.
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2025-09-24 |
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r-bestglm
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public |
Best subset glm using information criteria or cross-validation. Implements PCR and PLS using AIC/BIC. Implements one-standard deviation rule for use with the `caret` package.
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2025-09-24 |
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r-homologene
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public |
A wrapper for the homologene database by the National Center for Biotechnology Information ('NCBI'). It allows searching for gene homologs across species. Data in this package can be found at <ftp://ftp.ncbi.nih.gov/pub/HomoloGene/build68/>. The package also includes an updated version of the homologene database where gene identifiers and symbols are replaced with their latest (at the time of submission) version and functions to fetch latest annotation data to keep updated.
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2025-09-24 |
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r-hues
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public |
Creating effective colour palettes for figures is challenging. This package generates and plot palettes of optimally distinct colours in perceptually uniform colour space, based on 'iwanthue' <http://tools.medialab.sciences-po.fr/iwanthue/>. This is done through k-means clustering of CIE Lab colour space, according to user-selected constraints on hue, chroma, and lightness.
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2025-09-24 |
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r-adjustedcurves
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public |
Estimate and plot confounder-adjusted survival curves using either 'Direct Adjustment', 'Direct Adjustment with Pseudo-Values', various forms of 'Inverse Probability of Treatment Weighting', two forms of 'Augmented Inverse Probability of Treatment Weighting', 'Empirical Likelihood Estimation' or 'Targeted Maximum Likelihood Estimation'. Also includes a significance test for the difference between two adjusted survival curves and the calculation of adjusted restricted mean survival times. Additionally enables the user to estimate and plot cause-specific confounder-adjusted cumulative incidence functions in the competing risks setting using the same methods (with some exceptions). For details, see Denz et. al (2023) <doi:10.1002/sim.9681>.
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2025-09-24 |
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r-discretization
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public |
This package is a collection of supervised discretization algorithms. It can also be grouped in terms of top-down or bottom-up, implementing the discretization algorithms.
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2025-09-24 |
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r-sparkxgb
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public |
A 'sparklyr' <https://spark.posit.co/> extension that provides an interface for 'XGBoost' <https://github.com/dmlc/xgboost> on 'Apache Spark'. 'XGBoost' is an optimized distributed gradient boosting library.
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2025-09-24 |
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r-growthcleanr
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public |
Identifies implausible anthropometric (e.g., height, weight) measurements in irregularly spaced longitudinal datasets, such as those from electronic health records.
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2025-09-24 |
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r-hotelling
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public |
A set of R functions which implements Hotelling's T^2 test and some variants of it. Functions are also included for Aitchison's additive log ratio and centred log ratio transformations.
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2025-09-24 |
