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conda-forge / packages / r-sctransform

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-post-staging / r-sctransform

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Type Size Name Uploaded Downloads Labels
conda 569.6 kB | linux-64/r-sctransform-0.3.4-r41hef8c1a7_0.tar.bz2  3 years and 6 months ago 4886 main
conda 569.5 kB | linux-64/r-sctransform-0.3.4-r40hef8c1a7_0.tar.bz2  3 years and 6 months ago 12838 main
conda 557.5 kB | win-64/r-sctransform-0.3.3-r41h8b0e7af_1.tar.bz2  4 years and 2 months ago 856 main
conda 569.6 kB | win-64/r-sctransform-0.3.3-r40h8b0e7af_1.tar.bz2  4 years and 2 months ago 753 main
conda 565.9 kB | osx-64/r-sctransform-0.3.3-r40h5e60f97_1.tar.bz2  4 years and 2 months ago 239 main
conda 565.9 kB | osx-64/r-sctransform-0.3.3-r41h5e60f97_1.tar.bz2  4 years and 2 months ago 499 main
conda 572.7 kB | linux-64/r-sctransform-0.3.3-r40hf361f1a_1.tar.bz2  4 years and 2 months ago 6436 main
conda 572.7 kB | linux-64/r-sctransform-0.3.3-r41hf361f1a_1.tar.bz2  4 years and 2 months ago 9620 main
conda 569.6 kB | win-64/r-sctransform-0.3.3-r40hfb8a20d_0.tar.bz2  4 years and 2 months ago 742 main
conda 557.1 kB | win-64/r-sctransform-0.3.3-r41hfb8a20d_0.tar.bz2  4 years and 2 months ago 748 main
conda 566.0 kB | osx-64/r-sctransform-0.3.3-r40he434708_0.tar.bz2  4 years and 2 months ago 112 main
conda 565.8 kB | osx-64/r-sctransform-0.3.3-r41he434708_0.tar.bz2  4 years and 2 months ago 116 main
conda 572.4 kB | linux-64/r-sctransform-0.3.3-r40h78ebb21_0.tar.bz2  4 years and 2 months ago 2911 main
conda 572.5 kB | linux-64/r-sctransform-0.3.3-r41h78ebb21_0.tar.bz2  4 years and 2 months ago 3011 main
conda 441.6 kB | win-64/r-sctransform-0.3.2-r41hfb8a20d_1.tar.bz2  4 years and 9 months ago 877 main
conda 454.9 kB | osx-64/r-sctransform-0.3.2-r41he434708_1.tar.bz2  4 years and 9 months ago 431 main
conda 455.9 kB | linux-64/r-sctransform-0.3.2-r41h78ebb21_1.tar.bz2  4 years and 9 months ago 5271 main
conda 451.2 kB | win-64/r-sctransform-0.3.2-r36hfb8a20d_1.tar.bz2  4 years and 10 months ago 967 main
conda 450.2 kB | win-64/r-sctransform-0.3.2-r40hfb8a20d_1.tar.bz2  4 years and 10 months ago 889 main
conda 455.5 kB | osx-64/r-sctransform-0.3.2-r36he434708_1.tar.bz2  4 years and 10 months ago 528 main
conda 454.8 kB | osx-64/r-sctransform-0.3.2-r40he434708_1.tar.bz2  4 years and 10 months ago 334 main
conda 456.8 kB | linux-64/r-sctransform-0.3.2-r36h78ebb21_1.tar.bz2  4 years and 10 months ago 8859 main
conda 455.7 kB | linux-64/r-sctransform-0.3.2-r40h78ebb21_1.tar.bz2  4 years and 10 months ago 4652 main
conda 450.1 kB | win-64/r-sctransform-0.3.2-r40he3aa7d2_0.tar.bz2  5 years and 3 months ago 974 main
conda 450.3 kB | win-64/r-sctransform-0.3.2-r36he3aa7d2_0.tar.bz2  5 years and 3 months ago 959 main
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