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Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

copied from cf-post-staging / r-ggrasp
Type Size Name Uploaded Downloads Labels
conda 889.2 kB | noarch/r-ggrasp-1.2-r44hc72bb7e_4.conda  7 days and 51 minutes ago 38 main
conda 890.7 kB | noarch/r-ggrasp-1.2-r45hc72bb7e_4.conda  7 days and 53 minutes ago 43 main
conda 889.5 kB | noarch/r-ggrasp-1.2-r44hc72bb7e_3.conda  1 year and 1 month ago 961 main
conda 885.0 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_3.conda  1 year and 1 month ago 940 main
conda 889.8 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_2.conda  2 years and 2 months ago 1459 main
conda 880.3 kB | noarch/r-ggrasp-1.2-r42hc72bb7e_2.conda  2 years and 2 months ago 1528 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r42hc72bb7e_1.tar.bz2  2 years and 11 months ago 1763 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_1.tar.bz2  2 years and 11 months ago 1769 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r40hc72bb7e_0.tar.bz2  3 years and 5 months ago 2366 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_0.tar.bz2  3 years and 5 months ago 2350 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40hc72bb7e_1.tar.bz2  4 years and 4 months ago 2461 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r41hc72bb7e_1.tar.bz2  4 years and 4 months ago 2460 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40h6115d3f_1.tar.bz2  5 years and 4 months ago 3299 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_1.tar.bz2  5 years and 4 months ago 3294 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_0.tar.bz2  5 years and 11 months ago 4023 main cf202003
conda 1.2 MB | noarch/r-ggrasp-1.0-r35h6115d3f_0.tar.bz2  5 years and 11 months ago 4028 main cf202003

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