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Allows the calculation of both genetic diversity partition statistics, genetic differentiation statistics, and locus informativeness for ancestry assignment. It also provides users with various option to calculate bootstrapped 95\% confidence intervals both across loci, for pairwise population comparisons, and to plot these results interactively. Parallel computing capabilities and pairwise results without bootstrapping are provided. Also calculates F-statistics from Weir and Cockerham (1984). Various plotting features are provided, as well as Chi-square tests of genetic heterogeneity. Functionality for the calculation of various diversity parameters is possible for RAD-seq derived SNP data sets containing thousands of marker loci. A shiny application for the development of microsatellite multiplexes is also available.

copied from cf-staging / r-diversity
Type Size Name Uploaded Downloads Labels
conda 1.3 MB | win-64/r-diversity-1.9.90-r43h8ae3a7c_3.conda  7 months and 13 days ago 425 main
conda 1.3 MB | win-64/r-diversity-1.9.90-r44h8ae3a7c_3.conda  7 months and 13 days ago 428 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r44h25d921d_3.conda  7 months and 13 days ago 346 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r43h25d921d_3.conda  7 months and 13 days ago 355 main
conda 1.3 MB | linux-64/r-diversity-1.9.90-r43h0d4f4ea_3.conda  7 months and 13 days ago 882 main
conda 1.3 MB | linux-64/r-diversity-1.9.90-r44h0d4f4ea_3.conda  7 months and 13 days ago 968 main
conda 1.3 MB | win-64/r-diversity-1.9.90-r41ha856d6a_2.conda  1 year and 8 months ago 603 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r42hac7d2d5_2.conda  1 year and 8 months ago 318 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r43hac7d2d5_2.conda  1 year and 8 months ago 359 main
conda 1.3 MB | linux-64/r-diversity-1.9.90-r43ha503ecb_2.conda  1 year and 8 months ago 1537 main
conda 1.3 MB | linux-64/r-diversity-1.9.90-r42ha503ecb_2.conda  1 year and 8 months ago 1567 main
conda 1.4 MB | win-64/r-diversity-1.9.90-r41ha856d6a_1.tar.bz2  2 years and 4 months ago 537 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r42h49197e3_1.tar.bz2  2 years and 4 months ago 67 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r41h49197e3_1.tar.bz2  2 years and 4 months ago 73 main
conda 1.4 MB | linux-64/r-diversity-1.9.90-r42h7525677_1.tar.bz2  2 years and 4 months ago 1777 main
conda 1.4 MB | linux-64/r-diversity-1.9.90-r41h7525677_1.tar.bz2  2 years and 4 months ago 1744 main
conda 1.4 MB | win-64/r-diversity-1.9.90-r40ha856d6a_0.tar.bz2  2 years and 8 months ago 672 main
conda 1.4 MB | win-64/r-diversity-1.9.90-r41ha856d6a_0.tar.bz2  2 years and 8 months ago 680 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r41h8619c4b_0.tar.bz2  2 years and 8 months ago 75 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r40h8619c4b_0.tar.bz2  2 years and 8 months ago 75 main
conda 1.4 MB | linux-64/r-diversity-1.9.90-r40h7525677_0.tar.bz2  2 years and 8 months ago 2048 main
conda 1.4 MB | linux-64/r-diversity-1.9.90-r41h7525677_0.tar.bz2  2 years and 8 months ago 2048 main

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