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Allows the calculation of both genetic diversity partition statistics, genetic differentiation statistics, and locus informativeness for ancestry assignment. It also provides users with various option to calculate bootstrapped 95\% confidence intervals both across loci, for pairwise population comparisons, and to plot these results interactively. Parallel computing capabilities and pairwise results without bootstrapping are provided. Also calculates F-statistics from Weir and Cockerham (1984). Various plotting features are provided, as well as Chi-square tests of genetic heterogeneity. Functionality for the calculation of various diversity parameters is possible for RAD-seq derived SNP data sets containing thousands of marker loci. A shiny application for the development of microsatellite multiplexes is also available.

copied from cf-post-staging / r-diversity
Type Size Name Uploaded Downloads Labels
conda 1.3 MB | osx-64/r-diversity-1.9.90-r45ha730edb_4.conda  13 days and 38 minutes ago 27 main
conda 1.3 MB | win-64/r-diversity-1.9.90-r45hd8a2815_4.conda  13 days and 43 minutes ago 22 main
conda 1.3 MB | win-64/r-diversity-1.9.90-r44hd8a2815_4.conda  13 days and 45 minutes ago 24 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r44ha730edb_4.conda  13 days and 46 minutes ago 22 main
conda 1.3 MB | linux-64/r-diversity-1.9.90-r44h3697838_4.conda  13 days and 50 minutes ago 75 main
conda 1.3 MB | linux-64/r-diversity-1.9.90-r45h3697838_4.conda  13 days and 53 minutes ago 66 main
conda 1.3 MB | win-64/r-diversity-1.9.90-r43h8ae3a7c_3.conda  1 year and 2 months ago 456 main
conda 1.3 MB | win-64/r-diversity-1.9.90-r44h8ae3a7c_3.conda  1 year and 2 months ago 461 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r44h25d921d_3.conda  1 year and 2 months ago 372 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r43h25d921d_3.conda  1 year and 2 months ago 381 main
conda 1.3 MB | linux-64/r-diversity-1.9.90-r43h0d4f4ea_3.conda  1 year and 2 months ago 1357 main
conda 1.3 MB | linux-64/r-diversity-1.9.90-r44h0d4f4ea_3.conda  1 year and 2 months ago 1416 main
conda 1.3 MB | win-64/r-diversity-1.9.90-r41ha856d6a_2.conda  2 years and 3 months ago 619 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r42hac7d2d5_2.conda  2 years and 3 months ago 327 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r43hac7d2d5_2.conda  2 years and 3 months ago 366 main
conda 1.3 MB | linux-64/r-diversity-1.9.90-r43ha503ecb_2.conda  2 years and 3 months ago 1987 main
conda 1.3 MB | linux-64/r-diversity-1.9.90-r42ha503ecb_2.conda  2 years and 3 months ago 2020 main
conda 1.4 MB | win-64/r-diversity-1.9.90-r41ha856d6a_1.tar.bz2  2 years and 11 months ago 550 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r42h49197e3_1.tar.bz2  2 years and 11 months ago 74 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r41h49197e3_1.tar.bz2  2 years and 11 months ago 79 main
conda 1.4 MB | linux-64/r-diversity-1.9.90-r42h7525677_1.tar.bz2  2 years and 11 months ago 2205 main
conda 1.4 MB | linux-64/r-diversity-1.9.90-r41h7525677_1.tar.bz2  2 years and 11 months ago 2177 main
conda 1.4 MB | win-64/r-diversity-1.9.90-r40ha856d6a_0.tar.bz2  3 years and 3 months ago 684 main
conda 1.4 MB | win-64/r-diversity-1.9.90-r41ha856d6a_0.tar.bz2  3 years and 3 months ago 692 main
conda 1.3 MB | osx-64/r-diversity-1.9.90-r41h8619c4b_0.tar.bz2  3 years and 3 months ago 83 main

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