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conda-forge / packages / r-cooccur

This R package applies the probabilistic model of species co-occurrence (Veech 2013) to a set of species distributed among a set of survey or sampling sites. The algorithm calculates the observed and expected frequencies of co-occurrence between each pair of species. The expected frequency is based on the distribution of each species being random and independent of the other species. The analysis returns the probabilities that a more extreme (either low or high) value of co-occurrence could have been obtained by chance. The package also includes functions for visualizing species co-occurrence results and preparing data for downstream analyses.

copied from cf-staging / r-cooccur

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Type Size Name Uploaded Downloads Labels
conda 101.5 kB | win-64/r-cooccur-1.3-r44h11b023d_1006.conda  6 months and 11 days ago 204 main
conda 100.4 kB | win-64/r-cooccur-1.3-r43h11b023d_1006.conda  6 months and 11 days ago 183 main
conda 100.2 kB | osx-64/r-cooccur-1.3-r43h6b9d099_1006.conda  6 months and 11 days ago 157 main
conda 101.3 kB | osx-64/r-cooccur-1.3-r44h6b9d099_1006.conda  6 months and 11 days ago 158 main
conda 99.6 kB | linux-64/r-cooccur-1.3-r43hdb488b9_1006.conda  6 months and 11 days ago 776 main
conda 100.4 kB | linux-64/r-cooccur-1.3-r44hdb488b9_1006.conda  6 months and 11 days ago 732 main
conda 100.1 kB | win-64/r-cooccur-1.3-r41h6d2157b_1005.conda  1 year and 7 months ago 411 main
conda 99.7 kB | osx-64/r-cooccur-1.3-r42h6dc245f_1005.conda  1 year and 7 months ago 179 main
conda 99.8 kB | osx-64/r-cooccur-1.3-r43h6dc245f_1005.conda  1 year and 7 months ago 184 main
conda 99.0 kB | linux-64/r-cooccur-1.3-r42h57805ef_1005.conda  1 year and 7 months ago 1325 main
conda 99.3 kB | linux-64/r-cooccur-1.3-r43h57805ef_1005.conda  1 year and 7 months ago 1349 main
conda 101.3 kB | win-64/r-cooccur-1.3-r41h6d2157b_1004.tar.bz2  2 years and 3 months ago 533 main
conda 101.2 kB | osx-64/r-cooccur-1.3-r41h815d134_1004.tar.bz2  2 years and 3 months ago 72 main
conda 101.4 kB | osx-64/r-cooccur-1.3-r42h815d134_1004.tar.bz2  2 years and 3 months ago 73 main
conda 101.4 kB | linux-64/r-cooccur-1.3-r42h06615bd_1004.tar.bz2  2 years and 3 months ago 1665 main
conda 101.2 kB | linux-64/r-cooccur-1.3-r41h06615bd_1004.tar.bz2  2 years and 3 months ago 1745 main
conda 100.4 kB | win-64/r-cooccur-1.3-r41h6d2157b_1003.tar.bz2  3 years and 8 months ago 785 main
conda 106.5 kB | win-64/r-cooccur-1.3-r40h6d2157b_1003.tar.bz2  3 years and 8 months ago 793 main
conda 100.1 kB | osx-64/r-cooccur-1.3-r40h28b5c78_1003.tar.bz2  3 years and 8 months ago 132 main
conda 100.0 kB | osx-64/r-cooccur-1.3-r41h28b5c78_1003.tar.bz2  3 years and 8 months ago 129 main
conda 100.6 kB | linux-64/r-cooccur-1.3-r40hcfec24a_1003.tar.bz2  3 years and 8 months ago 2282 main
conda 100.6 kB | linux-64/r-cooccur-1.3-r41hcfec24a_1003.tar.bz2  3 years and 8 months ago 2318 main
conda 106.3 kB | win-64/r-cooccur-1.3-r36hda5aaf8_1003.tar.bz2  4 years and 8 months ago 1012 main
conda 105.7 kB | win-64/r-cooccur-1.3-r40hda5aaf8_1003.tar.bz2  4 years and 8 months ago 1025 main
conda 100.0 kB | osx-64/r-cooccur-1.3-r40h17f1fa6_1003.tar.bz2  4 years and 8 months ago 329 main
conda 100.3 kB | osx-64/r-cooccur-1.3-r36h17f1fa6_1003.tar.bz2  4 years and 8 months ago 312 main
conda 100.4 kB | linux-64/r-cooccur-1.3-r36hcdcec82_1003.tar.bz2  4 years and 8 months ago 2945 main
conda 99.8 kB | linux-64/r-cooccur-1.3-r40hcdcec82_1003.tar.bz2  4 years and 8 months ago 2944 main
conda 105.7 kB | win-64/r-cooccur-1.3-r36hda5aaf8_1002.tar.bz2  5 years and 6 months ago 1358 main cf202003
conda 104.5 kB | win-64/r-cooccur-1.3-r35hda5aaf8_1002.tar.bz2  5 years and 6 months ago 1380 main cf202003
conda 98.3 kB | osx-64/r-cooccur-1.3-r35h159158b_1002.tar.bz2  5 years and 6 months ago 356 main cf202003
conda 99.1 kB | osx-64/r-cooccur-1.3-r36h159158b_1002.tar.bz2  5 years and 6 months ago 352 main cf202003
conda 99.0 kB | linux-64/r-cooccur-1.3-r35hcdcec82_1002.tar.bz2  5 years and 6 months ago 3748 main cf202003
conda 100.0 kB | linux-64/r-cooccur-1.3-r36hcdcec82_1002.tar.bz2  5 years and 6 months ago 3766 main cf202003
conda 98.7 kB | linux-64/r-cooccur-1.3-r351h96ca727_1001.tar.bz2  6 years and 2 months ago 4559 main gcc7 cf202003
conda 98.3 kB | linux-64/r-cooccur-1.3-r351hc070d10_1.tar.bz2  6 years and 2 months ago 4467 main cf202003 cf201901
conda 98.4 kB | osx-64/r-cooccur-1.3-r351h46e59ec_1001.tar.bz2  6 years and 2 months ago 360 main gcc7 cf202003
conda 98.3 kB | osx-64/r-cooccur-1.3-r351hc070d10_1.tar.bz2  6 years and 2 months ago 351 main cf202003 cf201901
conda 104.1 kB | win-64/r-cooccur-1.3-r351h6115d3f_1001.tar.bz2  6 years and 2 months ago 1656 main cf202003 cf201901
conda 70.4 kB | osx-64/r-cooccur-1.3-r341h46e59ec_1.tar.bz2  6 years and 5 months ago 347 main cf202003 cf201901
conda 70.4 kB | linux-64/r-cooccur-1.3-r341h96ca727_1.tar.bz2  6 years and 5 months ago 4706 main cf202003 cf201901
conda 70.2 kB | osx-64/r-cooccur-1.3-r341h6115d3f_0.tar.bz2  6 years and 6 months ago 360 main cf202003 cf201901
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