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conda-forge / packages / r-cooccur

This R package applies the probabilistic model of species co-occurrence (Veech 2013) to a set of species distributed among a set of survey or sampling sites. The algorithm calculates the observed and expected frequencies of co-occurrence between each pair of species. The expected frequency is based on the distribution of each species being random and independent of the other species. The analysis returns the probabilities that a more extreme (either low or high) value of co-occurrence could have been obtained by chance. The package also includes functions for visualizing species co-occurrence results and preparing data for downstream analyses.

copied from cf-staging / r-cooccur

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Type Size Name Uploaded Downloads Labels
conda 101.5 kB | win-64/r-cooccur-1.3-r44h11b023d_1006.conda  7 months and 12 days ago 269 main
conda 100.4 kB | win-64/r-cooccur-1.3-r43h11b023d_1006.conda  7 months and 12 days ago 248 main
conda 100.2 kB | osx-64/r-cooccur-1.3-r43h6b9d099_1006.conda  7 months and 12 days ago 203 main
conda 101.3 kB | osx-64/r-cooccur-1.3-r44h6b9d099_1006.conda  7 months and 12 days ago 208 main
conda 99.6 kB | linux-64/r-cooccur-1.3-r43hdb488b9_1006.conda  7 months and 12 days ago 891 main
conda 100.4 kB | linux-64/r-cooccur-1.3-r44hdb488b9_1006.conda  7 months and 12 days ago 852 main
conda 100.1 kB | win-64/r-cooccur-1.3-r41h6d2157b_1005.conda  1 year and 8 months ago 482 main
conda 99.7 kB | osx-64/r-cooccur-1.3-r42h6dc245f_1005.conda  1 year and 8 months ago 219 main
conda 99.8 kB | osx-64/r-cooccur-1.3-r43h6dc245f_1005.conda  1 year and 8 months ago 237 main
conda 99.0 kB | linux-64/r-cooccur-1.3-r42h57805ef_1005.conda  1 year and 8 months ago 1433 main
conda 99.3 kB | linux-64/r-cooccur-1.3-r43h57805ef_1005.conda  1 year and 8 months ago 1459 main
conda 101.3 kB | win-64/r-cooccur-1.3-r41h6d2157b_1004.tar.bz2  2 years and 4 months ago 534 main
conda 101.2 kB | osx-64/r-cooccur-1.3-r41h815d134_1004.tar.bz2  2 years and 4 months ago 72 main
conda 101.4 kB | osx-64/r-cooccur-1.3-r42h815d134_1004.tar.bz2  2 years and 4 months ago 74 main
conda 101.4 kB | linux-64/r-cooccur-1.3-r42h06615bd_1004.tar.bz2  2 years and 4 months ago 1752 main
conda 101.2 kB | linux-64/r-cooccur-1.3-r41h06615bd_1004.tar.bz2  2 years and 4 months ago 1832 main
conda 100.4 kB | win-64/r-cooccur-1.3-r41h6d2157b_1003.tar.bz2  3 years and 9 months ago 787 main
conda 106.5 kB | win-64/r-cooccur-1.3-r40h6d2157b_1003.tar.bz2  3 years and 9 months ago 794 main
conda 100.1 kB | osx-64/r-cooccur-1.3-r40h28b5c78_1003.tar.bz2  3 years and 9 months ago 132 main
conda 100.0 kB | osx-64/r-cooccur-1.3-r41h28b5c78_1003.tar.bz2  3 years and 9 months ago 129 main
conda 100.6 kB | linux-64/r-cooccur-1.3-r40hcfec24a_1003.tar.bz2  3 years and 9 months ago 2366 main
conda 100.6 kB | linux-64/r-cooccur-1.3-r41hcfec24a_1003.tar.bz2  3 years and 9 months ago 2398 main
conda 106.3 kB | win-64/r-cooccur-1.3-r36hda5aaf8_1003.tar.bz2  4 years and 9 months ago 1013 main
conda 105.7 kB | win-64/r-cooccur-1.3-r40hda5aaf8_1003.tar.bz2  4 years and 9 months ago 1026 main
conda 100.0 kB | osx-64/r-cooccur-1.3-r40h17f1fa6_1003.tar.bz2  4 years and 9 months ago 329 main
conda 100.3 kB | osx-64/r-cooccur-1.3-r36h17f1fa6_1003.tar.bz2  4 years and 9 months ago 312 main
conda 100.4 kB | linux-64/r-cooccur-1.3-r36hcdcec82_1003.tar.bz2  4 years and 9 months ago 3033 main
conda 99.8 kB | linux-64/r-cooccur-1.3-r40hcdcec82_1003.tar.bz2  4 years and 9 months ago 3031 main
conda 105.7 kB | win-64/r-cooccur-1.3-r36hda5aaf8_1002.tar.bz2  5 years and 7 months ago 1359 main cf202003
conda 104.5 kB | win-64/r-cooccur-1.3-r35hda5aaf8_1002.tar.bz2  5 years and 7 months ago 1381 main cf202003
conda 98.3 kB | osx-64/r-cooccur-1.3-r35h159158b_1002.tar.bz2  5 years and 7 months ago 356 main cf202003
conda 99.1 kB | osx-64/r-cooccur-1.3-r36h159158b_1002.tar.bz2  5 years and 7 months ago 352 main cf202003
conda 99.0 kB | linux-64/r-cooccur-1.3-r35hcdcec82_1002.tar.bz2  5 years and 7 months ago 3827 main cf202003
conda 100.0 kB | linux-64/r-cooccur-1.3-r36hcdcec82_1002.tar.bz2  5 years and 7 months ago 3849 main cf202003
conda 98.7 kB | linux-64/r-cooccur-1.3-r351h96ca727_1001.tar.bz2  6 years and 3 months ago 4658 main gcc7 cf202003
conda 98.3 kB | linux-64/r-cooccur-1.3-r351hc070d10_1.tar.bz2  6 years and 3 months ago 4555 main cf202003 cf201901
conda 98.4 kB | osx-64/r-cooccur-1.3-r351h46e59ec_1001.tar.bz2  6 years and 3 months ago 360 main gcc7 cf202003
conda 98.3 kB | osx-64/r-cooccur-1.3-r351hc070d10_1.tar.bz2  6 years and 3 months ago 351 main cf202003 cf201901
conda 104.1 kB | win-64/r-cooccur-1.3-r351h6115d3f_1001.tar.bz2  6 years and 3 months ago 1659 main cf202003 cf201901
conda 70.4 kB | osx-64/r-cooccur-1.3-r341h46e59ec_1.tar.bz2  6 years and 6 months ago 347 main cf202003 cf201901
conda 70.4 kB | linux-64/r-cooccur-1.3-r341h96ca727_1.tar.bz2  6 years and 6 months ago 4788 main cf202003 cf201901
conda 70.2 kB | osx-64/r-cooccur-1.3-r341h6115d3f_0.tar.bz2  6 years and 7 months ago 360 main cf202003 cf201901
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