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Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.

copied from cf-staging / r-alakazam
Type Size Name Uploaded Downloads Labels
conda 1.8 MB | win-64/r-alakazam-0.3.0-r35h796a38f_1.tar.bz2  5 years and 5 months ago 1361 main cf202003
conda 1.8 MB | win-64/r-alakazam-0.3.0-r36h796a38f_1.tar.bz2  5 years and 5 months ago 1376 main cf202003
conda 1.8 MB | osx-64/r-alakazam-0.3.0-r36hf99fc2c_1.tar.bz2  5 years and 5 months ago 362 main cf202003
conda 1.8 MB | osx-64/r-alakazam-0.3.0-r35hf99fc2c_1.tar.bz2  5 years and 5 months ago 353 main cf202003
conda 1.8 MB | linux-64/r-alakazam-0.3.0-r36h0357c0b_1.tar.bz2  5 years and 5 months ago 3753 main cf202003
conda 1.8 MB | linux-64/r-alakazam-0.3.0-r35h0357c0b_1.tar.bz2  5 years and 5 months ago 3669 main cf202003
conda 1.8 MB | win-64/r-alakazam-0.3.0-r36h796a38f_0.tar.bz2  5 years and 5 months ago 1366 main cf202003
conda 1.8 MB | win-64/r-alakazam-0.3.0-r35h796a38f_0.tar.bz2  5 years and 5 months ago 1359 main cf202003
conda 1.8 MB | osx-64/r-alakazam-0.3.0-r36hf99fc2c_0.tar.bz2  5 years and 5 months ago 351 main cf202003
conda 1.8 MB | osx-64/r-alakazam-0.3.0-r35hf99fc2c_0.tar.bz2  5 years and 5 months ago 350 main cf202003
conda 1.8 MB | linux-64/r-alakazam-0.3.0-r36h0357c0b_0.tar.bz2  5 years and 5 months ago 3697 main cf202003
conda 1.8 MB | linux-64/r-alakazam-0.3.0-r35h0357c0b_0.tar.bz2  5 years and 5 months ago 3718 main cf202003

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