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conda-forge / packages / r-ahocorasicktrie

Aho-Corasick is an optimal algorithm for finding many keywords in a text. It can locate all matches in a text in O(N+M) time; i.e., the time needed scales linearly with the number of keywords (N) and the size of the text (M). Compare this to the naive approach which takes O(N*M) time to loop through each pattern and scan for it in the text. This implementation builds the trie (the generic name of the data structure) and runs the search in a single function call. If you want to search multiple texts with the same trie, the function will take a list or vector of texts and return a list of matches to each text. By default, all 128 ASCII characters are allowed in both the keywords and the text. A more efficient trie is possible if the alphabet size can be reduced. For example, DNA sequences use at most 19 distinct characters and usually only 4; protein sequences use at most 26 distinct characters and usually only 20. UTF-8 (Unicode) matching is not currently supported.

copied from cf-staging / r-ahocorasicktrie
Type Size Name Uploaded Downloads Labels
conda 80.6 kB | osx-64/r-ahocorasicktrie-0.1.2-r40h9951f98_0.tar.bz2  3 years and 11 months ago 131 main
conda 84.9 kB | linux-64/r-ahocorasicktrie-0.1.2-r40h03ef668_0.tar.bz2  3 years and 11 months ago 2479 main
conda 85.0 kB | linux-64/r-ahocorasicktrie-0.1.2-r41h03ef668_0.tar.bz2  3 years and 11 months ago 2502 main
conda 88.8 kB | win-64/r-ahocorasicktrie-0.1.2-r40h796a38f_0.tar.bz2  4 years and 6 months ago 980 main
conda 88.8 kB | win-64/r-ahocorasicktrie-0.1.2-r36h796a38f_0.tar.bz2  4 years and 6 months ago 980 main
conda 80.5 kB | osx-64/r-ahocorasicktrie-0.1.2-r40h710217c_0.tar.bz2  4 years and 6 months ago 298 main
conda 80.5 kB | osx-64/r-ahocorasicktrie-0.1.2-r36h710217c_0.tar.bz2  4 years and 6 months ago 297 main
conda 88.7 kB | linux-64/r-ahocorasicktrie-0.1.2-r36h0357c0b_0.tar.bz2  4 years and 6 months ago 2823 main
conda 89.0 kB | linux-64/r-ahocorasicktrie-0.1.2-r40h0357c0b_0.tar.bz2  4 years and 6 months ago 2929 main
conda 87.3 kB | win-64/r-ahocorasicktrie-0.1.0-r36h796a38f_1004.tar.bz2  4 years and 11 months ago 1007 main
conda 87.1 kB | win-64/r-ahocorasicktrie-0.1.0-r40h796a38f_1004.tar.bz2  4 years and 11 months ago 1017 main
conda 78.9 kB | osx-64/r-ahocorasicktrie-0.1.0-r36hc5da6b9_1004.tar.bz2  4 years and 11 months ago 327 main
conda 79.0 kB | osx-64/r-ahocorasicktrie-0.1.0-r40hc5da6b9_1004.tar.bz2  4 years and 11 months ago 318 main
conda 86.7 kB | linux-64/r-ahocorasicktrie-0.1.0-r40h0357c0b_1004.tar.bz2  4 years and 11 months ago 3322 main
conda 86.8 kB | linux-64/r-ahocorasicktrie-0.1.0-r36h0357c0b_1004.tar.bz2  4 years and 11 months ago 3120 main
conda 81.2 kB | win-64/r-ahocorasicktrie-0.1.0-r36h796a38f_1003.tar.bz2  5 years and 9 months ago 1352 main cf202003
conda 81.0 kB | win-64/r-ahocorasicktrie-0.1.0-r35h796a38f_1003.tar.bz2  5 years and 9 months ago 1358 main cf202003
conda 72.1 kB | osx-64/r-ahocorasicktrie-0.1.0-r36hf99fc2c_1003.tar.bz2  5 years and 9 months ago 344 main cf202003
conda 127.2 kB | osx-64/r-ahocorasicktrie-0.1.0-r35hf99fc2c_1003.tar.bz2  5 years and 9 months ago 357 main cf202003
conda 79.2 kB | linux-64/r-ahocorasicktrie-0.1.0-r35h0357c0b_1003.tar.bz2  5 years and 9 months ago 3998 main cf202003
conda 79.4 kB | linux-64/r-ahocorasicktrie-0.1.0-r36h0357c0b_1003.tar.bz2  5 years and 9 months ago 3939 main cf202003
conda 79.3 kB | linux-64/r-ahocorasicktrie-0.1.0-r351h29659fb_1002.tar.bz2  6 years and 5 months ago 4543 main gcc7 cf202003
conda 71.4 kB | osx-64/r-ahocorasicktrie-0.1.0-r351h466af19_1002.tar.bz2  6 years and 5 months ago 349 main gcc7 cf202003
conda 80.7 kB | win-64/r-ahocorasicktrie-0.1.0-r351h6115d3f_1002.tar.bz2  6 years and 5 months ago 1638 main cf202003 cf201901
conda 80.4 kB | win-64/r-ahocorasicktrie-0.1.0-r351h6115d3f_2.tar.bz2  6 years and 6 months ago 1676 main cf202003 cf201901

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