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r-ioncopy

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Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) <doi:10.18632/oncotarget.7451>.

Installation

To install this package, run one of the following:

Conda
$conda install r_test::r-ioncopy

Usage Tracking

2.1.1
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About

Summary

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) <doi:10.18632/oncotarget.7451>.

Last Updated

Sep 13, 2019 at 19:31

License

GPL-3

Total Downloads

1

Supported Platforms

noarch