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grch37-protein-coding-features-gencode-v1

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Protein Coding Features based on feature's gene biotype from the comprehensive set of gene annotations created on GRCh38 and mapped to GRCh37 by GENCODE (v34lift37). All non-protein coding features have been removed. Some annotations were obtained from GENCODE v19 when mapping failed. Scaffoldings, assenbly patches, and alternative loci are NOT included. Features include: CDS, Selenocysteine, UTR, exon, gene, start_codon, stop_codon, transcript.

Installation

To install this package, run one of the following:

Conda
$conda install ggd-genomics::grch37-protein-coding-features-gencode-v1

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Summary

Protein Coding Features based on feature's gene biotype from the comprehensive set of gene annotations created on GRCh38 and mapped to GRCh37 by GENCODE (v34lift37). All non-protein coding features have been removed. Some annotations were obtained from GENCODE v19 when mapping failed. Scaffoldings, assenbly patches, and alternative loci are NOT included. Features include: CDS, Selenocysteine, UTR, exon, gene, start_codon, stop_codon, transcript.

Last Updated

Aug 29, 2020 at 19:47

Total Downloads

22

Supported Platforms

noarch