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r-scrm

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A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution. Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next- Generation Sequencing technologies for up to several thousand sequences.

Installation

To install this package, run one of the following:

Conda
$conda install conda-forge::r-scrm

Usage Tracking

1.7.5
1.7.4_0
1.7.3_1
1.7.2_1
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Downloads (Last 6 months): 0

About

Summary

A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution. Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next- Generation Sequencing technologies for up to several thousand sequences.

Last Updated

Jan 8, 2024 at 17:28

License

GPL-3.0-or-later

Total Downloads

109.8K

Supported Platforms

macOS-64
win-64
linux-64