SNPio is a Python API for population genetic file processing, filtering, and analysis. It is designed to be a user-friendly tool for the manipulation of population genetic data in a variety of formats. SNPio can be used to filter data based on missingness, MAF and MAC, singletons, biallelic, and monomorphic sites. It can also generate summary statistics for population genetic analyses.
To install this package, run one of the following:
Summary
SNPio is a Python API for population genetic file processing, filtering, and analysis. It is designed to be a user-friendly tool for the manipulation of population genetic data in a variety of formats. SNPio can be used to filter data based on missingness, MAF and MAC, singletons, biallelic, and monomorphic sites. It can also generate summary statistics for population genetic analyses.
Last Updated
May 20, 2026 at 20:52
License
GPL-3.0-or-later
Supported Platforms
GitHub Repository
https://github.com/btmartin721/SNPioDocumentation
https://snpio.readthedocs.io/en/latest/