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whatsgnu-atb

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WhatsGNU protein allele frequency analysis for AllTheBacteria (2.4M+ genomes)

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::whatsgnu-atb

Usage Tracking

1.0.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

A custom reimplementation of WhatsGNU optimised for AllTheBacteria scale. Builds an LMDB-backed sharded database of protein allele frequencies across 2,438,285 bacterial genomes, and provides fast querying of any bacterial genome to obtain per-protein allele counts and species distributions. Includes a downloader for the pre-built database hosted on OSF.

About

Summary

WhatsGNU protein allele frequency analysis for AllTheBacteria (2.4M+ genomes)

Last Updated

Mar 27, 2026 at 12:19

License

GPL-3.0-only

Total Downloads

26

Version Downloads

26

Supported Platforms

noarch