whatsgnu-atb
WhatsGNU protein allele frequency analysis for AllTheBacteria (2.4M+ genomes)
WhatsGNU protein allele frequency analysis for AllTheBacteria (2.4M+ genomes)
To install this package, run one of the following:
A custom reimplementation of WhatsGNU optimised for AllTheBacteria scale. Builds an LMDB-backed sharded database of protein allele frequencies across 2,438,285 bacterial genomes, and provides fast querying of any bacterial genome to obtain per-protein allele counts and species distributions. Includes a downloader for the pre-built database hosted on OSF.
Summary
WhatsGNU protein allele frequency analysis for AllTheBacteria (2.4M+ genomes)
Last Updated
Mar 27, 2026 at 12:19
License
GPL-3.0-only
Total Downloads
26
Version Downloads
26
Supported Platforms
GitHub Repository
https://github.com/microbialARC/WhatsGNU-ATB