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vcf-pg-loader

Community

High-performance VCF to PostgreSQL loader with clinical-grade compliance

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::vcf-pg-loader

Usage Tracking

0.5.4
0.5.3
0.5.1
3 / 8 versions selected
Downloads (Last 6 months): 0

Description

vcf-pg-loader is a command-line tool for efficiently loading VCF variant data into PostgreSQL databases. It features streaming VCF parsing with cyvcf2, variant normalization using the vt algorithm, proper Number=A/R/G field handling during multi-allelic decomposition, and binary COPY protocol via asyncpg for maximum insert performance.

About

Summary

High-performance VCF to PostgreSQL loader with clinical-grade compliance

Last Updated

Dec 26, 2025 at 02:22

License

MIT

Total Downloads

125

Supported Platforms

noarch