UROPA (Universal RObust Peak Annotator) is a command line based tool, intended for genomic region annotation from e.g. peak calling. It detects the most appropriate annotation by taking parameters such as feature type, anchor, direction and strand into account. Furthermore, it allows filtering for GTF attribute values, e.g. protein_coding.
To install this package, run one of the following:
Summary
UROPA (Universal RObust Peak Annotator) is a command line based tool, intended for genomic region annotation from e.g. peak calling. It detects the most appropriate annotation by taking parameters such as feature type, anchor, direction and strand into account. Furthermore, it allows filtering for GTF attribute values, e.g. protein_coding.
Last Updated
Oct 22, 2023 at 20:15
License
MIT
Total Downloads
67.9K
Supported Platforms
Unsupported Platforms
Documentation
http://uropa-manual.readthedocs.io