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trim-galore

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Fast adapter and quality trimming for NGS data — Oxidized Edition (Rust)

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::trim-galore

Usage Tracking

2.2.0
2.1.0
0.6.11
0.6.10
0.6.9
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Downloads (Last 6 months): 0

Description

Trim Galore v2 is a Rust rewrite of the original Perl Trim Galore. Single static binary, no Python/Perl/Cutadapt/Java/igzip/pigz dependencies. Drop-in compatible with v0.6.x scripts and pipelines (same CLI, same output filenames, same report format) with adapter auto-detection (Illumina, Nextera, Small RNA, BGI/DNBSEQ), poly-G/poly-A trimming, paired-end single-pass processing, RRBS support, and bundled FastQC integration via fastqc-rust.

About

Summary

Fast adapter and quality trimming for NGS data — Oxidized Edition (Rust)

Last Updated

May 8, 2026 at 11:31

License

GPL-3.0-only

Supported Platforms

linux-64
linux-aarch64
macOS-arm64

Unsupported Platforms

macOS-64 Last supported version: 0.6.2
noarch Last supported version: 0.6.11