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tecap

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3' terminal exon capture diagnostics for long-read scRNA-seq

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::tecap

Usage Tracking

0.2.0
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Downloads (Last 6 months): 0

Description

tecap classifies long-read alignments by where their 3' end lands relative to the terminal exon, its UTR, and a polyA site atlas. It decomposes capture failures into nine mechanism buckets and measures reference base composition downstream of each cleavage site to distinguish classic A-tract internal priming from moderate-A priming characteristic of saturating in-solution oligo-dT. Designed for PacBio Iso-Seq / Kinnex and Oxford Nanopore cDNA BAMs. Direct-RNA sequencing is unsupported.

About

Summary

3' terminal exon capture diagnostics for long-read scRNA-seq

Last Updated

Apr 25, 2026 at 21:33

License

MIT

Supported Platforms

noarch