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sracat

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a command-line tool for extracting unordered read data from SRA files

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::sracat

Usage Tracking

0.2
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

sracat is small C++ program that uses the NCBI sra-toolkit C++ API to extract sequence (and optionally quailty scores) from SRA records. Unlike the fasterq-dump program included with the sra-toolkit, sracat does not output the reads in their origianlly submitted order, but rather outputs reads in the order in which they are stored in the SRA file.

About

Summary

a command-line tool for extracting unordered read data from SRA files

Last Updated

Sep 20, 2021 at 16:33

License

BSD-3-Clause

Total Downloads

8.3K

Supported Platforms

linux-64
macOS-64