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bioconda/r-locuszoomr

r-locuszoomr

Community

Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::r-locuszoomr

Usage Tracking

0.3.8
0.3.7
0.3.6
0.3.5
4 / 8 versions selected
Downloads (Last 6 months): 0

About

Summary

Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.

Last Updated

Mar 3, 2025 at 16:49

License

GPL-3

Total Downloads

970

Supported Platforms

noarch

Home

https://github.com/myles-lewis/locuszoomr