r-bascule
Bayesian inference and clustering of mutational signatures leveraging biological priors
Bayesian inference and clustering of mutational signatures leveraging biological priors
To install this package, run one of the following:
BASCULE is a Bayesian model to fit multiple signature types from multiple patients, leveraging a pre-existing catalogue of known signatures such as COSMIC. BASCULE searches for known signatures from the input catalogue as well as for new signatures that outside the catalogue, accounting for hidden structure in the input data (e.g., distinct tumour types). Moreover, bascule performs tensor clustering to retrieve latent groups in the input cohort from the exposures of multiple signature types jointly. The model uses non-negative matrix factorisation and variational inference implemented in the pybascule Python package.
Summary
Bayesian inference and clustering of mutational signatures leveraging biological priors
Last Updated
Jun 26, 2025 at 05:47
License
GPL-3.0-or-later
Total Downloads
375
Supported Platforms
Documentation
https://caravagnalab.github.io/bascule/