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r-bascule

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Bayesian inference and clustering of mutational signatures leveraging biological priors

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::r-bascule

Usage Tracking

1.0.1
1.0.0
2 / 8 versions selected
Downloads (Last 6 months): 0

Description

BASCULE is a Bayesian model to fit multiple signature types from multiple patients, leveraging a pre-existing catalogue of known signatures such as COSMIC. BASCULE searches for known signatures from the input catalogue as well as for new signatures that outside the catalogue, accounting for hidden structure in the input data (e.g., distinct tumour types). Moreover, bascule performs tensor clustering to retrieve latent groups in the input cohort from the exposures of multiple signature types jointly. The model uses non-negative matrix factorisation and variational inference implemented in the pybascule Python package.

About

Summary

Bayesian inference and clustering of mutational signatures leveraging biological priors

Last Updated

Jun 26, 2025 at 05:47

License

GPL-3.0-or-later

Total Downloads

375

Supported Platforms

noarch