piawka
The powerful AWK script to calculate population statistics in VCF files with support for varying ploidy and missing data
Installation
To install this package, run one of the following:
Usage Tracking
0.8.11
0.8.10
0.8.9
0.8.8
0.8.7
5 / 8 versions selected
Downloads (Last 6 months): 0
Description
The powerful awk script to calculate π, Dxy (or πxy, or Nei's D) and some more simple stats (Fst, Tajima's D, Ronfort's rho) in VCF files in the command line. Developed to analyze arbitrary-ploidy groups with substantial amounts of missing data. Largely inspired by https://github.com/ksamuk/pixy
About
Summary
The powerful AWK script to calculate population statistics in VCF files with support for varying ploidy and missing data
Last Updated
Mar 4, 2025 at 18:26
License
MIT
Total Downloads
4.9K
Supported Platforms
noarch
GitHub Repository
https://github.com/novikovalab/piawkaDocumentation
https://github.com/novikovalab/piawka/wiki