orographer

Community

Command line tool for visualizing alignments from BAM files.

Versions

Installation

To install this package, run one of the following:

Conda

$conda install bioconda::orographer

Usage Tracking

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Description

Orographer reads a BAM file and one or more genomic regions, then generates interactive Bokeh-based HTML plots for reviewing alignments. It supports optional GTF/GFF3 gene tracks and VCF variant overlay.

About

Summary

Command line tool for visualizing alignments from BAM files.

Last Updated

Mar 27, 2026 at 11:25

License

Pacific Biosciences Software License Agreement

Total Downloads

Version Downloads

Supported Platforms

noarch

Home

https://github.com/PacificBiosciences/Orographer

GitHub Repository

https://github.com/PacificBiosciences/Orographer

Documentation

https://github.com/PacificBiosciences/Orographer/blob/main/docs/user_guide.md