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bioconda/count_logan_tig_coverage

count_logan_tig_coverage

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Compute length-weighted mean and median coverage from Logan contig/unitig FASTA files

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::count_logan_tig_coverage

Usage Tracking

0.1.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

countlogantig_coverage reads coverage values from the ka:f: tag present in Logan contig and unitig headers, and computes length-weighted mean and median coverage statistics.

About

Summary

Compute length-weighted mean and median coverage from Logan contig/unitig FASTA files

Last Updated

Jun 22, 2026 at 01:51

License

GPL-3.0-only

Supported Platforms

linux-64
macOS-64

Home

https://github.com/pierrepeterlongo/count_logan_tig_coverage

GitHub Repository

https://github.com/pierrepeterlongo/count_logan_tig_coverage

Documentation

https://github.com/pierrepeterlongo/count_logan_tig_coverage/blob/main/README.md