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btrim

Community

This tool is made to remove "tips" (short dead ends) from a compacted de Bruijn graph and more generally to remove sequencing errors. Used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::btrim

Usage Tracking

1.0.1
1.0.0
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Downloads (Last 6 months): 0

About

Summary

This tool is made to remove "tips" (short dead ends) from a compacted de Bruijn graph and more generally to remove sequencing errors. Used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)

Last Updated

Nov 29, 2018 at 12:12

License

AGPL-3.0

Total Downloads

11.1K

Supported Platforms

linux-64
linux-aarch64
macOS-arm64
macOS-64