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bioconductor-weitrix

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Tools for matrices with precision weights, test and explore weighted or sparse data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-weitrix

Usage Tracking

1.18.0
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Downloads (Last 6 months): 0

Description

Data type and tools for working with matrices having precision weights and missing data. This package provides a common representation and tools that can be used with many types of high-throughput data. The meaning of the weights is compatible with usage in the base R function "lm" and the package "limma". Calibrate weights to account for known predictors of precision. Find rows with excess variability. Perform differential testing and find rows with the largest confident differences. Find PCA-like components of variation even with many missing values, rotated so that individual components may be meaningfully interpreted. DelayedArray matrices and BiocParallel are supported.

About

Summary

Tools for matrices with precision weights, test and explore weighted or sparse data

Last Updated

Dec 22, 2024 at 17:43

License

LGPL-2.1 | file LICENSE

Total Downloads

16.2K

Supported Platforms

noarch