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bioconductor-umi4cats

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UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-umi4cats

Usage Tracking

1.12.0
1.10.0
1.8.0
1.4.0
1.2.0
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Downloads (Last 6 months): 0

Description

UMI-4C is a technique that allows characterization of 3D chromatin interactions with a bait of interest, taking advantage of a sonication step to produce unique molecular identifiers (UMIs) that help remove duplication bias, thus allowing a better differential comparsion of chromatin interactions between conditions. This package allows processing of UMI-4C data, starting from FastQ files provided by the sequencing facility. It provides two statistical methods for detecting differential contacts and includes a visualization function to plot integrated information from a UMI-4C assay.

About

Summary

UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data

Last Updated

Dec 19, 2023 at 00:14

License

Artistic-2.0

Total Downloads

15.0K

Supported Platforms

noarch