bioconductor-tomoda
Tomo-seq data analysis
Tomo-seq data analysis
To install this package, run one of the following:
This package provides many easy-to-use methods to analyze and visualize tomo-seq data. The tomo-seq technique is based on cryosectioning of tissue and performing RNA-seq on consecutive sections. (Reference: Kruse F, Junker JP, van Oudenaarden A, Bakkers J. Tomo-seq: A method to obtain genome-wide expression data with spatial resolution. Methods Cell Biol. 2016;135:299-307. doi:10.1016/bs.mcb.2016.01.006) The main purpose of the package is to find zones with similar transcriptional profiles and spatially expressed genes in a tomo-seq sample. Several visulization functions are available to create easy-to-modify plots.
Summary
Tomo-seq data analysis
Last Updated
Dec 21, 2024 at 08:15
License
MIT + file LICENSE
Total Downloads
13.4K
Supported Platforms