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bioconductor-tidysinglecellexperiment

Community

Brings SingleCellExperiment to the Tidyverse

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-tidysinglecellexperiment

Usage Tracking

1.16.0
1.12.0
1.10.0
1.8.0
1.4.0
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Downloads (Last 6 months): 0

Description

'tidySingleCellExperiment' is an adapter that abstracts the 'SingleCellExperiment' container in the form of a 'tibble'. This allows tidy data manipulation, nesting, and plotting. For example, a 'tidySingleCellExperiment' is directly compatible with functions from 'tidyverse' packages dplyr and tidyr, as well as plotting with ggplot2 and plotly. In addition, the package provides various utility functions specific to single-cell omics data analysis (e.g., aggregation of cell-level data to pseudobulks).

About

Summary

Brings SingleCellExperiment to the Tidyverse

Last Updated

Dec 25, 2024 at 00:10

License

GPL-3

Total Downloads

13.0K

Supported Platforms

noarch