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bioconductor-tbsignatureprofiler

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Profile RNA-Seq Data Using TB Pathway Signatures

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-tbsignatureprofiler

Usage Tracking

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Description

Gene signatures of TB progression, TB disease, and other TB disease states have been validated and published previously. This package aggregates known signatures and provides computational tools to enlist their usage on other datasets. The TBSignatureProfiler makes it easy to profile RNA-Seq data using these signatures and includes common signature profiling tools including ASSIGN, GSVA, and ssGSEA. Original models for some gene signatures are also available. A shiny app provides some functionality alongside for detailed command line accessibility.

About

Summary

Profile RNA-Seq Data Using TB Pathway Signatures

Last Updated

Dec 23, 2023 at 00:09

License

MIT + file LICENSE

Total Downloads

10.7K

Supported Platforms

noarch