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bioconductor-targetscan.mm.eg.db

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TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-targetscan.mm.eg.db

Usage Tracking

0.6.1
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Summary

TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.

Last Updated

Dec 28, 2018 at 21:43

License

file LICENSE

Total Downloads

5.1K

Supported Platforms

noarch