bioconductor-spotsweeper
Spatially-aware quality control for spatial transcriptomics
Spatially-aware quality control for spatial transcriptomics
To install this package, run one of the following:
Spatially-aware quality control (QC) software for both spot-level and artifact-level QC in spot-based spatial transcripomics, such as 10x Visium. These methods calculate local (nearest-neighbors) mean and variance of standard QC metrics (library size, unique genes, and mitochondrial percentage) to identify outliers spot and large technical artifacts.
Summary
Spatially-aware quality control for spatial transcriptomics
Last Updated
Mar 2, 2026 at 06:52
License
MIT + file LICENSE
Supported Platforms