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bioconductor-splicewiz

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interactive analysis and visualization of alternative splicing in R

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-splicewiz

Usage Tracking

1.8.0
1.4.0
1.2.2
1.0.0
4 / 8 versions selected
Downloads (Last 6 months): 0

Description

The analysis and visualization of alternative splicing (AS) events from RNA sequencing data remains challenging. SpliceWiz is a user-friendly and performance-optimized R package for AS analysis, by processing alignment BAM files to quantify read counts across splice junctions, IRFinder-based intron retention quantitation, and supports novel splicing event identification. We introduce a novel visualization for AS using normalized coverage, thereby allowing visualization of differential AS across conditions. SpliceWiz features a shiny-based GUI facilitating interactive data exploration of results including gene ontology enrichment. It is performance optimized with multi-threaded processing of BAM files and a new COV file format for fast recall of sequencing coverage. Overall, SpliceWiz streamlines AS analysis, enabling reliable identification of functionally relevant AS events for further characterization.

About

Summary

interactive analysis and visualization of alternative splicing in R

Last Updated

Jan 5, 2025 at 15:26

License

MIT + file LICENSE

Total Downloads

5.8K

Supported Platforms

linux-64
macOS-64