bioconductor-spatzie
Identification of enriched motif pairs from chromatin interaction data
Identification of enriched motif pairs from chromatin interaction data
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Identifies motifs that are significantly co-enriched from enhancer-promoter interaction data. While enhancer-promoter annotation is commonly used to define groups of interaction anchors, spatzie also supports co-enrichment analysis between preprocessed interaction anchors. Supports BEDPE interaction data derived from genome-wide assays such as HiC, ChIA-PET, and HiChIP. Can also be used to look for differentially enriched motif pairs between two interaction experiments.
Summary
Identification of enriched motif pairs from chromatin interaction data
Last Updated
Jan 5, 2025 at 02:28
License
GPL-3
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7.0K
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