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bioconductor-spatzie

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Identification of enriched motif pairs from chromatin interaction data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-spatzie

Usage Tracking

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Description

Identifies motifs that are significantly co-enriched from enhancer-promoter interaction data. While enhancer-promoter annotation is commonly used to define groups of interaction anchors, spatzie also supports co-enrichment analysis between preprocessed interaction anchors. Supports BEDPE interaction data derived from genome-wide assays such as HiC, ChIA-PET, and HiChIP. Can also be used to look for differentially enriched motif pairs between two interaction experiments.

About

Summary

Identification of enriched motif pairs from chromatin interaction data

Last Updated

Jan 5, 2025 at 02:28

License

GPL-3

Total Downloads

7.0K

Supported Platforms

noarch