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bioconductor-spatialcpie

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Cluster analysis of Spatial Transcriptomics data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-spatialcpie

Usage Tracking

1.22.0
1.18.0
1.16.0
1.14.0
1.10.0
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Downloads (Last 6 months): 0

Description

SpatialCPie is an R package designed to facilitate cluster evaluation for spatial transcriptomics data by providing intuitive visualizations that display the relationships between clusters in order to guide the user during cluster identification and other downstream applications. The package is built around a shiny "gadget" to allow the exploration of the data with multiple plots in parallel and an interactive UI. The user can easily toggle between different cluster resolutions in order to choose the most appropriate visual cues.

About

Summary

Cluster analysis of Spatial Transcriptomics data

Last Updated

Dec 22, 2024 at 02:54

License

MIT + file LICENSE

Total Downloads

20.9K

Supported Platforms

noarch